EY729384

Overview
NameEY729384
Unique NameEY729384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729384 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.504e-27
Identity = 55/137 (40.15%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  166 VPAYAMSVFKVPLGVCDDIQRAIANFWWGSQKEKRCIHWAKWERLSQAKSR-GGLGFKDFSSFNQALVAKQGWRLLQHPHSLAARVLEAKYFKKADFLNAKLGSNPSFIWRSIIWGRQIILAGSRWRIGKGDKVQIY 573
            +P YAMS F++   +C  +  A+  FWW S + KR I W  W++L ++K   GGLGF+D   FNQAL+AKQ +R++  PH+L +R+L ++YF  +  +   +G+ PS+ WRSII GR+++  G    IG G   +++
Sbjct:    3 LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVW 139          
BLAST of EY729384 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.238e-22
Identity = 61/188 (32.45%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   25 LPSMIGRKRSSFFQDVKLKVMEKISNWQHKFFSSGGKEVLIKAVAQVVPAYAMSVFKVPLGVCDDIQRAIANFWWGSQKEKRCIHWAKWERLSQAKSRGGLGFKDFSSFNQALVAKQGWRLLQHPHSLAARVLEAKY----FKKADFLNAKLGSNPSFIWRSIIWG-RQIILAGSRWRIGKGDKVQIY 573
            +P +  R     F ++  +V  ++S W+ K  S  G+  L KAV   +P ++MS   +P  + + + +    F WGS  EK+  H  KW ++   K  GGLG +   S N+AL++K GWRLLQ  +SL   VL+ KY     + + +L  K   + S  WRSI  G R ++  G  W  G G +++ +
Sbjct:    1 MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPK--GSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFW 186          
The following BLAST results are available for this feature:
BLAST of EY729384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
M310_ARATH1.504e-2740.15Uncharacterized mitochondrial protein AtMg00310 OS... [more]
RNHX1_ARATH4.238e-2232.45Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-016-C02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729384 ID=EY729384; Name=EY729384; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAATACTTAGGTCTACCTTCAATGATAGGGAGGAAGAG
AAGTAGTTTTTTCCAAGATGTCAAACTCAAGGTGATGGAGAAGATATCCA
ATTGGCAGCATAAATTTTTCTCCAGTGGGGGCAAGGAAGTGTTGATTAAG
GCTGTGGCTCAGGTTGTTCCAGCATATGCCATGAGCGTGTTCAAAGTTCC
TCTAGGAGTGTGTGATGATATTCAGAGAGCTATTGCCAATTTCTGGTGGG
GATCCCAAAAAGAGAAGAGATGTATTCACTGGGCGAAATGGGAACGACTA
AGCCAAGCGAAGAGTAGAGGAGGGCTGGGCTTTAAAGACTTCTCAAGTTT
TAACCAAGCATTAGTGGCTAAACAGGGGTGGAGATTACTGCAACATCCAC
ATTCGTTAGCAGCAAGGGTGCTGGAGGCTAAATATTTCAAGAAAGCTGAT
TTTTTAAATGCAAAGCTTGGATCTAACCCGAGCTTTATATGGAGAAGCAT
CATCTGGGGAAGACAAATTATTTTGGCTGGTTCAAGATGGAGAATTGGGA
AGGGGGACAAGGTGCAGATCTACAAGGCTACCTTGATTCCAGAGGCCTCC
ACATGTAGACCCACCTCTCGGGCCACCTTGGCCGAAAAATTCTATGTCGT
CATGTTATTGATGATGACGACCGGTGGGACGAGAGGAAGATGTCCTGCCA
TGTGGGAAAGCTAGACCGCCCGCGAGATGTGGGCTGGCTCTTCCTATGCC
GGCAAGGATGGACGATGCCGGGGGAGTTGACCAAGAGGGAGGTGCGTGGG
ACGAGGTGGCACGAGTTGGTTTGCATCTAGATCATCACGCCCCCACCCTG
AAAAGAAGCATCCGGGGAAGACTGGGGGCCGTGTTAACCTGACCGCCTAT
GT
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