EY729351

Overview
NameEY729351
Unique NameEY729351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10061 contig Csv1_Contig10061:427..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_LUPLU (Glutaminyl-tRNA synthetase OS=Lupinus luteus PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.050e-45
Identity = 85/110 (77.27%), Postives = 95/110 (86.36%), Query Frame = 3
Query:   45 QKDKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKGGK 374
            +K KPKGVLHWV++PSPGV+PL+VEVRLFE+LF SENPAELD+WL DLNP SKV I  AY    L  A +GDRFQFERLGYFAVD+DSTPEKLVFNRTVTLKDS+ KGGK
Sbjct:  685 KKTKPKGVLHWVSQPSPGVDPLKVEVRLFERLFLSENPAELDNWLGDLNPHSKVEISNAYGVSLLKDAKLGDRFQFERLGYFAVDQDSTPEKLVFNRTVTLKDSYGKGGK 794          

HSP 2 Score: 25.409 bits (54), Expect = 9.050e-45
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:   25 RAEYDPSKKTNQR 63
            RAEYDPSKKT  +
Sbjct:  678 RAEYDPSKKTKPK 690          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_CAEEL (Probable glutaminyl-tRNA synthetase OS=Caenorhabditis elegans GN=ers-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.269e-23
Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   45 QKDKPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELD----DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVDKDSTPEKLVFNRTVTLKDSFPKG 368
            +KDKPK  +HWVA+P      +  EVRL+++LF S+NP +       +LSD+NPDS  V+  A  + S+  + V DRFQFER+G+F VD+DST   LVFNRTV LKD    G
Sbjct:  679 EKDKPKAFIHWVAKP------VSCEVRLYDRLFKSKNPEDAQLVPGGFLSDINPDSLTVVYNALIDQSIAKSKVYDRFQFERIGFFCVDRDSTSSTLVFNRTVMLKDGGASG 784          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHISS (Glutaminyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHIFL (Glutaminyl-tRNA synthetase OS=Shigella flexneri GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHIF8 (Glutaminyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHIDS (Glutaminyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHIBS (Glutaminyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_SHIB3 (Glutaminyl-tRNA synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_ESCF3 (Glutaminyl-tRNA synthetase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
BLAST of EY729351 vs. ExPASy Swiss-Prot
Match: SYQ_ECOUT (Glutaminyl-tRNA synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=glnS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.037e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   54 KPKGVLHWVAEPSPGVNPLRVEVRLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGYFAVD-KDSTPEKLVFNRTVTLKDSFPKGGK 374
            K KGV+HWV+      + L VE+RL+++LF+  NP   DD+LS +NP+S +VI + +AEPSL  A  G  FQFER GYF +D + ST EK VFNRTV L+D++ K G+
Sbjct:  452 KVKGVIHWVS----AAHALPVEIRLYDRLFSVPNPGAADDFLSVINPES-LVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE 554          
The following BLAST results are available for this feature:
BLAST of EY729351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
SYQ_LUPLU9.050e-4577.27Glutaminyl-tRNA synthetase OS=Lupinus luteus PE=2 ... [more]
SYQ_CAEEL8.269e-2349.11Probable glutaminyl-tRNA synthetase OS=Caenorhabdi... [more]
SYQ_SHISS2.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella sonnei (str... [more]
SYQ_SHIFL2.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella flexneri GN... [more]
SYQ_SHIF82.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella flexneri se... [more]
SYQ_SHIDS2.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella dysenteriae... [more]
SYQ_SHIBS2.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella boydii sero... [more]
SYQ_SHIB32.037e-2150.93Glutaminyl-tRNA synthetase OS=Shigella boydii sero... [more]
SYQ_ESCF32.037e-2150.93Glutaminyl-tRNA synthetase OS=Escherichia ferguson... [more]
SYQ_ECOUT2.037e-2150.93Glutaminyl-tRNA synthetase OS=Escherichia coli (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729351 ID=EY729351; Name=EY729351; organism=Citrus sinensis; type=EST; length=567bp
CCACGCGTCCGATTCTTCACATTCCGGGCTGAATATGATCCTTCCAAAAA
GACAAACCAAAGGGAGTTCTTCACTGGGTTGCTGAGCCTTCCCCTGGTGT
CAATCCACTAAGGGTGGAAGTCAGATTGTTTGAAAAATTGTTCAACTCTG
AGAATCCTGCAGAACTTGATGATTGGCTTTCTGATTTGAATCCGGATTCC
AAAGTGGTGATTCCTGAAGCATATGCAGAACCATCACTTCACAGTGCTGC
TGTCGGGGACAGATTCCAATTTGAAAGGCTAGGGTACTTTGCAGTTGATA
AGGATTCCACTCCGGAGAAACTTGTTTTCAACCGGACAGTCACACTAAAA
GATAGCTTTCCCAAAGGTGGGAAGTAGGAAGTAGGACCCTTGCAAATGGA
AAACAGATGGAGCATTAGATGGGCTATTACTATGAGCTGCTTCTTACTTG
TTATGAAAATTTTATACCTGTGTAAAAATATCATTCACTAAATCTTGCAA
GATATTTTAGGTTATAATTGAAGTTTTGCTTGATACTANNNNNAAAAAAA
AAAAAAAAAAAAAAAAA
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