EY729349

Overview
NameEY729349
Unique NameEY729349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_CHLTR (Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia trachomatis GN=nrdA PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.049e-42
Identity = 100/268 (37.31%), Postives = 149/268 (55.60%), Query Frame = -2
Query:   11 ITIEEIQDQVXXALMRAGEQKVARDYVIYXDSGAKERAVRSPAEEAAVQ---AHPSIRITLADGTLXPLDLGRXNTIITEACEGLEEV-DGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 802
            I IE+IQD V   LM  G   VA++Y++Y ++ A+ R  R   E+ + +   A  ++ +   DG+   +   +    +  AC    E  D  L+      N Y G+  ++V  A +M AR  +E+EP+Y+FV A LL+D +  E LG    A+     ++   +      YIA+G  + L   +   FDL+ L  A++  RD QF+Y+G+Q LYDRYF H +G R E PQ+F+MRVAMGLA+ E+ K   AI FYNLLS+F Y  +TP
Sbjct:  183 IDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNRE--EDGSTEKTIAEEAVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAE-----DLEQAHRDHFKRYIAEGDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQDKTSWAITFYNLLSTFRYTPATP 443          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_CHLPN (Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia pneumoniae GN=nrdA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.049e-42
Identity = 105/267 (39.33%), Postives = 152/267 (56.93%), Query Frame = -2
Query:   11 ITIEEIQDQVXXALMRAGEQKVARDYVIYXDSGAKERAVRSP-AEEAAVQAHPSIRITLADGTLXPLDLGRXNTIITEACEGLEEV-DGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEE-KQKEDRAIEFYNLLSSFDYMSSTP 802
            I +EEIQD V   LM AG   VA++Y++Y ++ A+ RA +    +E  V    +  +   DGT   L         + AC+   +  D  L+      NLY G+   +V TA +M AR  +EREP+Y+F+ A LL  +L  E LG      S+    +++++ K    YI  G E+ L NP L  +DL+ L + ++  RDQQF+Y+G+Q LYDRYF   +G R E  Q+F+MRV+MGLA+ E +QK   AI FYNLLS+F Y  +TP
Sbjct:  181 INLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACIMAARANIEREPDYAFIAAELLTSSLYEETLGC-----SSQDPNLSEIHKKHFKEYILNGEEYRL-NPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQKNFWAITFYNLLSTFRYTPATP 441          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_CHLMU (Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia muridarum GN=nrdA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.760e-41
Identity = 101/268 (37.69%), Postives = 146/268 (54.48%), Query Frame = -2
Query:   11 ITIEEIQDQVXXALMRAGEQKVARDYVIYXDSGAKERAVRSPAEEAAVQAHPS---IRITLADGTLXPLDLGRXNTIITEACEGLEEV-DGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 802
            I IE+IQD V   LM  G    A++Y++Y ++ A+ R  R   E+  V+  PS     +   DG+   +   +    +  AC    E  D  L+      N Y G+  ++V  A +M AR  +E+EP+Y+FV A LL+D +  E L       S    ++  +Y      YI +G  + L   +   FDL+ L  A++  RD QF+Y+G+Q LYDRYF H DG R E PQ+F+MRVAMGLA++E+ K   AI FYNLLS+F Y  +TP
Sbjct:  183 IDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNR--VEDQIVEEAPSEETFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLACIMAARANIEKEPDYAFVAAELLLDVVYKEALD-----RSRGDEDLEQVYRDHFKRYIMEGDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVAMGLALKEQDKTYWAITFYNLLSTFRYTPATP 443          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_HELPY (Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter pylori GN=nrdA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = -2
Query:   11 IRITLADGTLXPLDLGRXNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVERE-PNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIR--FELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 643
            I +   +G + PLD+ +      +A + LE V    ++ +      D +   ++   L+ TA   ++ + PN+SFV +RL +  L  +  GF G      + E A+   + L  +  K             FDLE L   I  ERD QF YLG++TLYDRY + KD      ELPQ  FM +AM LA  E++    A+EFY +LS F+ M +TP
Sbjct:    2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIKTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGFKEK-------------FDLEFLNSQIKPERDFQFNYLGIKTLYDRYLL-KDANNNPIELPQHMFMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATP 201          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_HELPJ (Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter pylori J99 GN=nrdA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 71/214 (33.18%), Postives = 106/214 (49.53%), Query Frame = -2
Query:   11 IRITLADGTLXPLDLGRXNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVERE-PNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIR--FELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 643
            I +   +G + PLD+ +      +A + LE V    ++ +      D +   ++   L+ TA   ++ + PN+SFV +RL +  L  +  GF G      + E A+   + L  +  K             FDLE L   I  ERD QF YLG++TLYDRY + KD      ELPQ  FM +AM LA  E++    A+EFY +LS F+ M +TP
Sbjct:    2 ITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLIKTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGFKEK-------------FDLEFLNSQIKPERDFQFNYLGIKTLYDRYLL-KDANNHPIELPQHMFMSIAMFLAQNEQELNKIALEFYEVLSKFEAMCATP 201          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_AQUAE (Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex aeolicus GN=nrdA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 68/213 (31.92%), Postives = 101/213 (47.42%), Query Frame = -2
Query:   11 GTLXPLDLGRXNTIITEACEGLEEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVERE-PNYSFVTARLLM-----DTLRAEGLGFLGVADSATHHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIH-KDGIRFELPQVFFMRVAMGLAIEEKQKE--DRAIEFYNLLSSFDYMSSTP 622
            G    LD+ +    I  ACEGL  VD   ++ +      DG+   ++   L+ TA   V  E P++++  ARLL+     D     G            +   + Y+  +  Y+ KGI  E L    +  D  KL   I  ERD  FTY G++ LYDRY +  ++G   ELPQ  +M +AM LA+ EK +E    A +FY++LS      +TP
Sbjct:   10 GRKEKLDINKIRIAIKFACEGLN-VDPLELEADAQIQFRDGITTKEIQQLLIKTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYS-FVKEYVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELPQEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATP 220          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 63/209 (30.14%), Postives = 98/209 (46.89%), Query Frame = -2
Query:   11 DGTLXPLDLGRXNTIITEACEGL--EEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALP--AYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 625
            DG    +   +  + I + C GL  + VD   I  + ++ LY GV   +++T    TA TL  + P+Y+ + AR+ +  L  E       A       M DLY    P     +  +    L+ +LA  D  +L  AI ++RD  + Y G +TL   Y +  +G   E PQ   MRV++G+    K+  D AIE YNLLS   +  ++P
Sbjct:    7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKE-------AKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKD--RLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKEDIDAAIETYNLLSERWFTHASP 203          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 62/209 (29.67%), Postives = 97/209 (46.41%), Query Frame = -2
Query:   11 DGTLXPLDLGRXNTIITEACEGL--EEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALP--AYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 625
            DG    +   +  + I + C GL  + VD   I  + ++ LY GV   +++T    TA TL  + P+Y+ + AR+ +  L  E               M DLY    P     +  +    L+ +LA  D  +L  AI ++RD  + Y G +TL   Y +  +G   E PQ   MRV++G+    K+  D AIE YNLLS   +  ++P
Sbjct:    7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKE-------TKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKD--RLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKEDIDAAIETYNLLSERWFTHASP 203          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 61/209 (29.19%), Postives = 96/209 (45.93%), Query Frame = -2
Query:   11 DGTLXPLDLGRXNTIITEACEGL--EEVDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALP--AYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 625
            DG    +   +  + I + C GL  + VD   I  + ++ LY GV   +++T    TA TL  + P+Y+ + AR+ +  L  E               M DLY    P     +  +    L+ ++A  D  +L  AI ++RD  + Y G +TL   Y +  +G   E PQ   MRV++G+    K+  D AIE YNLLS   +  + P
Sbjct:    7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKE-------TKKVFSDVMEDLYNYINPHNGRHSPMVASSTLDIVMANKD--RLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKEDIDAAIETYNLLSEKWFTHAPP 203          
BLAST of EY729349 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 61/209 (29.19%), Postives = 96/209 (45.93%), Query Frame = -2
Query:   11 DGTLXPLDLGRXNTIITEACEGLEE--VDGDLIQRETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADL--YAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGIRFELPQVFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTP 625
            DG    +   +  + I + C GL    VD   I  + ++ LY GV   +++T    TA T   + P+Y+ + AR+ +  L  E               M DL  Y   L +  +  I  E L+ +LA  D  +L  AI ++RD  + + G +TL   Y +  +G   E PQ   MRV++G+    K+    AIE YNLLS   +  ++P
Sbjct:    7 DGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLAAETAATSTTKHPDYAILAARIAVSNLHKE-------TKKVFSEVMEDLYNYVNPLNSRHSPMISKETLDIVLANKD--RLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGI---HKEDIAAAIETYNLLSEKWFTHASP 203          
The following BLAST results are available for this feature:
BLAST of EY729349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RIR1_CHLTR6.049e-4237.31Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_CHLPN6.049e-4239.33Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_CHLMU1.760e-4137.69Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_HELPY3.121e-2233.18Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_HELPJ4.076e-2233.18Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_AQUAE1.039e-1731.92Ribonucleoside-diphosphate reductase subunit alpha... [more]
RIR1_PONAB4.086e-1430.14Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN1.189e-1329.67Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE2.648e-1329.19Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE5.900e-1329.19Ribonucleoside-diphosphate reductase large subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-G05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729349 ID=EY729349; Name=EY729349; organism=Citrus sinensis; type=EST; length=881bp
CCGGAATTCCCGGGGTCGACGACATGTAGTCGAAGGACGACAACAGGTTG
TAGAACTCGATGGCACGGTCTTCTTTCTGCTTCTCTTCGATCGCCAGGCC
CATGGCTACGCGCATGAAGAACACTTGCGGCAGTTCGAAGCGGATACCGT
CCTTGTGGATGAAGTAACGGTCGTACAGGGTTTGCAGGCCCAGGTAGGTG
AACTGCTGGTCGCGCTCGTGGTTGATCGCCTTGCCGAGTTTTTCAAGGTC
GAAGGTGGCCAGGATCGGGTTCAGCAATTCGAATTCGATACCCTTGGCGA
TGTACGCCGGCAGGGCCTTGGCATACAGGTCGGCCATCTCGTGGTGCGTG
GCGCTGTCGGCGACGCCGAGGAAGCCCAGGCCTTCGGCACGCAGGGTGTC
CATCAGCAGGCGCGCGGTCACGAACGAGTAGTTTGGCTCACGCTCAACCA
GGGTACGGGCGGTCATCACCAGGGCGGTGTTGACGTCGGTCAGGGCCACG
CCGTCGTACAGGTTCTTCAGGGTTTCGCGCTGGATCAGGTCGCCATCGAC
TTCTTCCAGGCCTTCGCAGGCCTCGGTGATGATGGTGTTCANGCGGCCCA
GGTCCAGCGGTGNCAACGTACCGTCGGCCAGGGTGATGCGGATCGACGGG
TGAGCTTGTACGGCAGCTTCTTCAGCCGGGGAACGTACGGCACGTTCCTT
GGCGCCGGAGTCACNGTAAATCACGTAGTCGCGGGCAACTTTCTGCTCGC
CGGCACGCATCAGGGCCANTNCGACCTGGTCCTGGATTTCTTCGATGGTG
ATTGTGCCGCCCATGGCCTGCAACGCTTGAACGTTCGGTGACTGTTCGGC
CAGGCCCCCACGGGGTCTTGGATCGCCACGA
back to top