EY729337

Overview
NameEY729337
Unique NameEY729337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.175e-16
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFE+SL DL N+E+HAYRKI+LRAEDVQGKNVLTNFW
Sbjct:   55 KIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.004e-16
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFEVSL DL N+E+H+YRKI+LRAEDVQGKNVLTNFW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFEVSL DL N+E+ AYRKI+LRAEDVQGKNVLTNFW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFEVSL DL N+E++AYRKI+LRAEDVQG+NVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-14
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGL+HRVFE+SL DL  +E+H++RKI+LRAED+QGKNVLTNFW
Sbjct:   55 KIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.875e-14
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFE+SL DL  +E+ AYRKI+LRAEDVQG+NVLTNFW
Sbjct:   55 KIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFEVSL DL  +E+ ++RKI+LRAEDVQGKNVLTNFW
Sbjct:   55 KIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFEVSL DL  +E+ AYRKI+LRAEDVQG+NVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFW 101          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 9.308e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IAS+GL  RVFEVSL DL N+E+ A+RKIKLRAEDVQGKNVLTNFW
Sbjct:   54 KIASDGLNFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFW 100          
BLAST of EY729337 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.216e-13
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  592 QIASEGLKHRVFEVSLXDLLNEEEHAYRKIKLRAEDVQGKNVLTNFW 732
            +IASEGLKHRVFE+SL DL  +E++A+RKI+LRAEDVQGKNVLTNF+
Sbjct:   55 KIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFY 101          
The following BLAST results are available for this feature:
BLAST of EY729337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RS3A2_VITVI1.175e-1685.1140S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_HELAN2.004e-1685.1140S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_ORYSJ7.614e-1685.1140S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A2_ARATH6.446e-1580.8540S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_CATRO1.436e-1474.4740S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A1_VITVI1.875e-1478.7240S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_TOBAC2.449e-1478.7240S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA5.457e-1478.7240S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_TORRU9.308e-1478.7240S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_CICAR1.216e-1376.6040S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-F03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729337 ID=EY729337; Name=EY729337; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGGACCAATGATGATGCTCCTTTCTCTTTACATCTGTGAAT
GGGATATGTTGTTTACTCAGATTTATTGGTATTATACTAGAGCGCATGTG
TATGTAGGCTCGTAGAGGAGTTGGACTAAAATTTTATAGGATACCTGTTT
ATGCATCACATGTAGATTAAATGCTTTTATTTGTAAGATTGGAATACACG
GGATCACACACATATAGGTTTGGTAATATTGACTTGCTTAGTTAATGTTT
GATTTCATATGTGGCCTAAGTTGGTTCTTCATGATGAATGACTAATGGTG
ATGCTCCTTTCTCCTTTAATCCATTGATGGAATATGTTGTTTACTCAGAT
ATATTGGTATTGTACTATAGTACTGAGTTGATTCAATGGCTTGTGTCTGT
AGGCTTGAAGGGGAGTAGAAGTAACACTTTATTGGATATTTGTTTATGCA
TGACATGGAGAATAAATTATTTTATTTTGGACATACATGCATGGTTGGTG
TACGTCAAGCTTTCACTGCATTCGGCCAACCAACTAGGCTATCTTTTGTG
GAACACTCACACACTCATTTTAATTGCTCGAGTCTTTTTAACAGATTGCA
TCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTANGTGATCTTCT
CAATGAAGAAGAGCATGCTTACAGGAAGATCAAACTGAGAGCTGAAGATG
TCCAAGGGAAGAATGTTTTGACTAACTTCTGGGTATACTTTAATGGATGG
GAAATGTTTTGTTTGCTTCACAAATTTCACTCTGCTAGTGACATGCTTAC
AGTTTCACCCATTCTTTTGAATTATTTAGGGCATGAATTCACTACAGACA
GCTGAGGTCCTTGGTTAGGAGATGGATACCTGATTGACCTT
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