EY729335

Overview
NameEY729335
Unique NameEY729335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729335_ssr619 microsatellite EY729335_ssr619:619..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY729335 vs. ExPASy Swiss-Prot
Match: Y2070_ARATH (Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   40 GSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQSFPLPIIHGFTVKNAEIIFSSSKITVCSDV 270
            GS++LN F  ++ WSKIG+ +   +Q     +++ +F+PYVN+ L + FPLPI   FT+KN +I++ +S I VC+D+
Sbjct:  433 GSLRLNDFNATMKWSKIGEFQTNYVQAATSRILEALFLPYVNTRLKRGFPLPIPGDFTIKNIKIVYVNSGILVCTDI 509
The following BLAST results are available for this feature:
BLAST of EY729335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2070_ARATH2.167e-1341.56Putative BPI/LBP family protein At3g20270 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729335 ID=EY729335; Name=EY729335; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGGTTAAAATCTTACGTAATAACCTTNGGTGGTAGTGTGAA
ATTGAACGGCTTTACGATGTCATTGACTTGGAGCAAAATTGGTAAACTGC
GGTTGTATCTCATTCAGCCGGTGGTGTGGGCAGTTATCCAAACCGTTTTT
GTGCCATATGTAAATTCCCATCTCGGACAAAGCTTCCCTTTGCCCATCAT
TCACGGTTTCACCGTTAAGAATGCTGAGATTATATTCTCAAGTTCGAAAA
TTACAGTTTGCAGCGATGTGGCATATGCAGATTCACACAATCTTAATCAG
ATTTTCATTCCATTTTCCAATAGATACACATAAATTAAGGTTTCAAGGAG
TCCTGTAAATGCTTGCAGGGAAAGCAAACAAAGTTTCAGTTTTCCAGATA
CTAACGCCTTTGTACAGAGTTGTTGATATTTAAGCTTCAGCTACAGTTCT
TCTTCACCAGCTTTTCAGTGTACGAGTTTGATAAAAAAAACTTCAAATAT
CTATTTATCTATTTATTTTGATAAGGGGGCCGGCAGAACACAGCCCAAAA
AGAGGAAAAAGANCAAACAGNGGAGAGAACAGAAAAAGAACAAGGAGAGC
GGCGAGCGCCGCACGGGGGCGCGCGCGCAAAGGCCGGGAGGTCGCGTCCG
GCGCGCCCGTCTGTCGTTCGAGCTTCTGGCGATCGCTGATAAACCACATC
GGTCGGGGTTCTTCTAGCGGGGACGGCCCTTCGGGGGACGATCACGCAGG
CGCTCCCAAGACCTCGGCCCGGTCCTGGCCACCGGGTGTGGGGTGTACAG
AACCCTCCGGCGCCCACTGCGCGGCGACGGCCTGGTGTGCGGTCTCATGC
CTTGGTGTAGGCGTTCCTCGCGCGAGGCTGTACCGCACAGAACGTTCATA
CATCAGCACTTGAGATTATTGT
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