EY729334

Overview
NameEY729334
Unique NameEY729334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729334_ssr59 microsatellite EY729334_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
EY729334_ssr103 microsatellite EY729334_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12845 contig Csv1_Contig12845:31..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729334 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.125e-11
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  334 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRAHAGCVXGANETGTKRSPVR---SVEERKEEYDRXRARIFSGPSSPNSEDTLTQVSTDMENIGFNEMRGKCQELHSDA 894
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     ++ ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R ++      N+   +    R   S+EER+EEY R R RIFS  S  + E+ +       E+    + R +   ++ DA
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFRVNKDA 336          
BLAST of EY729334 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 50/162 (30.86%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  334 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRAHAGCVXGANETGTKRSPVR---SVEERKEEYDRXRARIFSGPSSPN 801
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R  A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of EY729334 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 50/162 (30.86%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  334 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRAHAGCVXGANETGTKRSPVR---SVEERKEEYDRXRARIFSGPSSPN 801
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+     ++ ++  G  +++ KT+ ++ P  R SE      ++    E  +  I +R  A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGM-----DHNVDQTGKAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
The following BLAST results are available for this feature:
BLAST of EY729334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
R3HD1_HUMAN2.125e-1129.17R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
R3HD2_MOUSE3.624e-1130.86R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD2_BOVIN3.624e-1130.86R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729334 ID=EY729334; Name=EY729334; organism=Citrus sinensis; type=EST; length=948bp
CACGCGTCCGCCCACGCGTCCGGGATTGGCCTTTTTCCCCTTTGCCTTTG
TCTTCTTGTCTCTCTCTCTCCTTCTCTCCTGATGCCCACAAGAAAGAAAC
CCTCTTCTTCTTCTTGATTTCTTCTATTTTTCATCCTGTCTGTGAAGCAA
ACAGAGAGGAAAACAAGAAAGAATTAGAAGAAGAGGAGATACAACAGAGA
GAAAGAGAAAGAAGAATTATAGTTAAGACTCTTATCAAAGGTCAAAGCCC
ATCCCCCACCCCCAATGGACTCAGCATCGTCAGCCACAGCTGCTGCTGCA
ATTTTTAATGAGAGAGAGTCAATGGTGGATCCATTTTTGGTTGAGGCTCT
CCAGAATCCTCGTCATCGTCTCACCATTCTGCGTATGGAACTTGATATTC
AGAGGTTTTTGCAAAATCCTGATCAGCAGCATTTCGAGTTCCAACATTTT
CCTACTTCTTATCTCCGACTGGCTGCACACCGTGTTTCTCAACATTATGG
GCTAGTAACTATGGTTCAGGAAAATGGCATAGAAGGGCTGGGTAACAGGA
TTTTGGTGAGGAAAACAGCAGAAAGCAAATATCCTGCTGTCCGTTTATCT
GAGATTCCTGCTAAGCAGTCGGAAGAAAGTGATAAGCTTGAAAAGATTAA
AATTGCCATCAGGCGTAGGGCCCATGCTGGATGTGTTNATGGAGCAAATG
AAACTGGGACGAAACGAAGTCCTGTTAGAAGTGTGGAAGAGAGGAAGGAG
GAGTATGATCGANCACGTGCCCGCATCTTTAGTGGTCCTAGCAGTCCTAA
CTCAGAGGATACGCTTACTCAGGTCTCTACAGATATGGAAAATATTGGCT
TTAACGAGATGAGAGGGAAATGTCAGGAACTCCATTCTGATGCAGAAAAG
ATATTANTATCCAGAACGTGCTGGTTGTCTCCATTGGCATTTTCGAAA
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