EY729299

Overview
NameEY729299
Unique NameEY729299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: TLOV1_ARATH (Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 77/161 (47.83%), Postives = 93/161 (57.76%), Query Frame = 1
Query:  226 GHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCKREV--XXXXXXXXXXXXXXXXXXTGLEIEDSCEASD 702
            GHPIVFAS GFLKM+G+SR E+IGRNG++FQGP+TN                  V+LLNY+K G+PFWMLF M PVFGK+DG+ T+FVAVQVPI  R+H R         G  S      FGSC+REV                     GLE  + CEAS+
Sbjct:   48 GHPIVFASLGFLKMTGYSREEVIGRNGKVFQGPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDDGKVTNFVAVQVPISGREHHRK---KLRNVGDLSSDTSPTFGSCRREVCFGNFVCQDRALPVECDDDEQGLEDWEQCEASE 205          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  232 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKED-GRATHFVAVQVPI------VSRKHMRNSGMSYS 549
            PIV+AS GF  M+G+S  EI+GRN R  QGP T+                    LLNYKKDGTPFW L  ++P+  K+D G    F+ +QV +      V+ K +R +G+S S
Sbjct:  146 PIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 256          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: LVHK1_ERYLH (Blue-light-activated histidine kinase 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_02980 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  208 SICLSKGH----PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQ 498
            +IC+S  H    P+V+ ++ FL ++G++R EI+GRN R  QG  T+                  V+LLNY+KDG PFW    + P++G EDG   +F   Q
Sbjct:   49 AICISDPHQPDCPVVYVNQAFLDLTGYAREEIVGRNCRFLQGADTDPEQVRKLREGIAAERYTVVDLLNYRKDGIPFWNAVHVGPIYG-EDGTLQYFYGSQ 148          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: LOVHK_PSEU2 (Blue-light-activated protein OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_2700 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  229 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQVPIVSRK 519
            +PI+FA+R FL+M+G++  EIIG N R  QGP T+                    +LNY+KDG+ FW    +SPV+  + G   +F A Q+ I  R+
Sbjct:   45 NPIIFANRAFLEMTGYASEEIIGSNCRFLQGPDTDRTAVQSIRDAIDQRVDISTEILNYRKDGSSFWNALFISPVY-NDAGELIYFFASQLDISRRR 140          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: LOVHK_PSE14 (Blue-light-activated protein OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_2483 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  229 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQVPIVSRK 519
            +PI+F++R FL+M+G+S  EIIG N R  QGP T+                    +LNY+KDG+ FW    +SPV+  + G   +F A Q+ I  R+
Sbjct:   45 NPIIFSNRAFLEMTGYSSEEIIGTNCRFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNALFISPVY-NDAGDLIYFFASQLDISRRR 140          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 37/113 (32.74%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  229 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQVPI------VSRKHMRNSGMSYS 549
            +PI++AS GF  M+G++  E++GRN R  QG  T+                    +LNYKKDGT FW L  ++P+   E G+   F+ +QV +         K +R +G+  S
Sbjct:  209 YPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPES 320          
BLAST of EY729299 vs. ExPASy Swiss-Prot
Match: LOVHK_OCHA4 (Blue-light-activated histidine kinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_3652 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  229 HPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSPVFGKEDGRATHFVAVQVPI 507
            +PI+FA+  F  ++G+   EIIG+N R  QGP T+                  +++LNYKK G PFW    +SPV   E+G   HFV+ Q+ +
Sbjct:   44 NPIIFANEAFQNLTGYEADEIIGKNCRFLQGPGTDPKHVEIIHSALEAEQSVEIDILNYKKSGEPFWNRLHISPV-KTENGELHHFVSSQLDV 135          
The following BLAST results are available for this feature:
BLAST of EY729299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TLOV1_ARATH3.821e-3247.83Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1... [more]
PHOT2_ARATH4.693e-1440.71Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=... [more]
LVHK1_ERYLH2.575e-1236.63Blue-light-activated histidine kinase 1 OS=Erythro... [more]
LOVHK_PSEU22.847e-1137.11Blue-light-activated protein OS=Pseudomonas syring... [more]
LOVHK_PSE142.847e-1137.11Blue-light-activated protein OS=Pseudomonas syring... [more]
PHOT1_ARATH4.856e-1132.74Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=... [more]
LOVHK_OCHA48.284e-1136.56Blue-light-activated histidine kinase OS=Ochrobact... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-B04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729299 ID=EY729299; Name=EY729299; organism=Citrus sinensis; type=EST; length=812bp
CACGCGTCCGCGGACGCGTGGGCTTTGATAAAACAAATCAGCGGGCCACC
GTATGTCTTCGCTGTACAAGTACAGTAAAGCACCGTTACAATCAGTCTTA
CAAAGTAAACGACACCTGCTGATGACGCGGACTGGATAAGTATGTGGTTC
ACGTTCTGTGTGTATGCAGGCCGTTTCCCCAATCTCATCTCCATCGTTTA
TTAGCCCTCGATATGCCTGAGCAAAGGCCACCCAATCGTGTTTGCAAGTC
GAGGATTCCTGAAAATGTCTGGTTTTTCAAGGGCAGAAATAATTGGCAGA
AATGGCAGAATGTTTCAAGGTCCAAGGACTAATAGAAGAACAATTATGGA
AATTCGAGAGGCAATTCGTGAAGAGAGGCCAATTGAGGTTAATTTGTTGA
ATTATAAGAAAGATGGGACACCCTTTTGGATGTTGTTTAAAATGAGTCCG
GTTTTTGGTAAAGAAGATGGGCGGGCGACTCATTTTGTGGCGGTTCAAGT
GCCTATAGTTTCAAGAAAACATATGAGAAATAGTGGAATGAGTTATAGTG
AAGATGGTGGAGGGTCCAGATTGAGAGAGATTGTGTTTGGTTCGTGTAAA
AGGGAGGTCTGCTCGGATTCTTTGTTGGATTTGGATNCGTGTTTGGCTCT
TGATTCGGATGATACAGGATTAGAAATTGAAGATTCGTGTGAGGCAAGTG
ATTTAAGAACGAAAGCTGTACGCTATCACAATCTGTTGTGCACAACTATA
TCATGACAGCAATGTGTGTGAAAAATCNCTACTGGATGGCTCACAGTCTC
ATAATTACCTGG
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