EY729297

Overview
NameEY729297
Unique NameEY729297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: HEXR_PSEAE (HTH-type transcriptional regulator hexR OS=Pseudomonas aeruginosa GN=hexR PE=4 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.128e-38
Identity = 85/203 (41.87%), Postives = 130/203 (64.04%), Query Frame = -2
Query:    1 IRTSEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 609
            +  +E KVA+ +L +P       +A  A +  +SEPT+ RFCR+ G SG+ +LK++LAQSLA+GA+F   A+ EDD    Y+ KIF  T+ +L    + LDP  + +AV  + QA+++ F+G GAS +VA DAQHKFFR  L  +A +D  MQ M A      D+ + IS +GR+++L+  A+L RE+GA+++ L  + +PLA
Sbjct:   15 LNKAERKVAEVILQNPQQATRFSIAALAQAAAVSEPTVNRFCRSFGMSGYPELKIQLAQSLASGAAFVTQAVAEDDGPEAYTRKIFSNTIASLDSAHKLLDPRVIDRAVDLLIQARQIHFFGLGASASVALDAQHKFFRFNLAVSAQADVLMQRMIASVAHTGDLFVVISYTGRTRELVEVAHLARENGASVLGLTAAGSPLA 217          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURTA (Bifunctional protein glk OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.247e-37
Identity = 76/200 (38.00%), Postives = 120/200 (60.00%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURPS (Bifunctional protein glk OS=Burkholderia pseudomallei GN=glk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.247e-37
Identity = 76/200 (38.00%), Postives = 120/200 (60.00%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURP1 (Bifunctional protein glk OS=Burkholderia pseudomallei (strain 1710b) GN=glk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.247e-37
Identity = 76/200 (38.00%), Postives = 120/200 (60.00%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURXL (Bifunctional protein glk OS=Burkholderia xenovorans (strain LB400) GN=glk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.127e-37
Identity = 76/200 (38.00%), Postives = 120/200 (60.00%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  358 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPVSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVERAIDLLNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 557          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURS3 (Bifunctional protein glk OS=Burkholderia sp. (strain 383) GN=glk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.779e-37
Identity = 76/200 (38.00%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURCA (Bifunctional protein glk OS=Burkholderia cenocepacia (strain AU 1054) GN=glk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.779e-37
Identity = 76/200 (38.00%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ D A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   ++ A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVENAIEILNGARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: GLK_BURMA (Bifunctional protein glk OS=Burkholderia mallei GN=glk PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.740e-37
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            +E +VAD  L+ P +  + P+ + A    +S+PT++RFCR++GC G  D KLKLA  L          +H  D+   +  K+ D T+  ++++RE L+   +++A+  ++ A+R+EFYG G S  VA DA +KFFR  +   AY D +MQA SA  L   DV + +S+SGR+ +LL   ++  ++GA +I +  S TPLA
Sbjct:  357 AERRVADLALNHPRSIINDPIVNIARKADVSQPTVIRFCRSLGCQGLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA 556          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: HEXR_ECOLI (HTH-type transcriptional regulator hexR OS=Escherichia coli (strain K12) GN=hexR PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.379e-36
Identity = 86/200 (43.00%), Postives = 121/200 (60.50%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCPSQTPLA 600
            SE KVA+ +L  P    HS +A  A    +SEPT+ RFCR++   GF D KL LAQSLA G  +    ++EDDSV  Y+ KIF++ + TL  VR  LD   + +AV  ++QA+++ F+G G+S AVA DA +KFFR  +      D  +Q MS +     DV + IS +GR+K+L+  A L RE+ A +I L  + TPLA
Sbjct:   17 SERKVAEVILASPDNAIHSSIAAMALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLA 216          
BLAST of EY729297 vs. ExPASy Swiss-Prot
Match: Y211_THETN (Uncharacterized HTH-type transcriptional regulator TTE0211 OS=Thermoanaerobacter tengcongensis GN=TTE0211 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.929e-30
Identity = 79/201 (39.30%), Postives = 112/201 (55.72%), Query Frame = -2
Query:    1 SEIKVADHVLHDPAA*RHSPMADSAHSVGISEPTIVRFCRAIGCSGFQDLKLKLAQSLAAGASFGQFAIHEDDSVAXYSLKIFDTTLHTLMEVREKLDPVELQKAVTAMSQAQRVEFYGFGASGAVAADAQHKFFRLLLTAAAYSDPHMQAMSAVTLKPTDVAICISQSGRSKDLLITANLVRESGATLITLCP-SQTPLA 600
            SE K+A ++L +P       + + A++   SE +I+RFCR IG  GFQ+LK+K+A SLA         I  +D V     KI +     +      L+  EL KA  A++ A +++FYG  ASG VA DA  KF R+ +   AY D H+Q  SAV LK  DVA  IS SG +K+++      +E+GAT I+L    Q+PLA
Sbjct:   18 SEAKIAKYILENPTVVTELSVNELANACDTSEASIIRFCRTIGLKGFQELKIKIAVSLAKQTRKLDGGITSEDDVMAVIQKIANFNKQAIDSTIAVLNAEELTKAAEALANANKIDFYGVAASGVVAYDAMLKFSRINIPCTAYQDTHLQLTSAVNLKKGDVAFGISYSGATKEIVEAIQTAKEAGATTISLTKYGQSPLA 218          
The following BLAST results are available for this feature:
BLAST of EY729297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
HEXR_PSEAE1.128e-3841.87HTH-type transcriptional regulator hexR OS=Pseudom... [more]
GLK_BURTA1.247e-3738.00Bifunctional protein glk OS=Burkholderia thailande... [more]
GLK_BURPS1.247e-3738.00Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURP11.247e-3738.00Bifunctional protein glk OS=Burkholderia pseudomal... [more]
GLK_BURXL2.127e-3738.00Bifunctional protein glk OS=Burkholderia xenovoran... [more]
GLK_BURS32.779e-3738.00Bifunctional protein glk OS=Burkholderia sp. (stra... [more]
GLK_BURCA2.779e-3738.00Bifunctional protein glk OS=Burkholderia cenocepac... [more]
GLK_BURMA4.740e-3737.50Bifunctional protein glk OS=Burkholderia mallei GN... [more]
HEXR_ECOLI1.379e-3643.00HTH-type transcriptional regulator hexR OS=Escheri... [more]
Y211_THETN1.929e-3039.30Uncharacterized HTH-type transcriptional regulator... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-015-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729297 ID=EY729297; Name=EY729297; organism=Citrus sinensis; type=EST; length=910bp
CGCCAATGGCGTCTGGCTCGGGCACAGGGTAATCAGGGTCGCGCCGCTTT
CACGCACCAGGTTGGCGGTGATCAGCAAATCCTTGGAGCGGCCGGACTGG
GAAATGCAGATCGCCACGTCGGTGGGCTTCAACGTCACTGCCGACATCGC
CTGCATGTGCGGGTCGCTGTAGGCCGCCGCCGTCAGCAGCAAACGGAAGA
ACTTGTGCTGGGCATCCGCCGCCACCGCACCGGACGCGCCGAAACCATAG
AACTCCACGCGCTGGGCCTGGGACATGGCGGTCACGGCTTTTTGCAGCTC
TACCGGGTCAAGCTTTTCCCGCACTTCCATCAGGGTATGCAGGGTGGTGT
CGAAAATTTTCAGGCTGTANTCGGCGACGGAGTCGTCTTCGTGAATCGCG
AACTGCCCGAAGCTCGCACCGGCGGCGAGGCTCTGGGCCAGCTTGAGCTT
CAAGTCCTGGAACCCGGAGCAACCAATGGCGCGGCAGAAGCGCACGATGG
TCGGCTCGCTGATTCCCACGCTGTGGGCCGAGTCCGCCATGGGACTGTGC
CTTCAAGCCGCAGGGTCATGCAGCACGTGATCGGCAACCTTGATTTCCGA
TGTGCGTATCAGGTGGCCCGACGGGGCGATATGTTGCACAGGGTCCAAGG
GCTGGGACTCTGTTGTGGGCGGACGCCGGGGAGGTAGCGCGCGGTGGGTG
GGGGGGCCTCAGTACCGCTAGGGCCGGCGATGCGTCGGTTAGTGGGGCGT
TGCCGGTGAGACGGGCGAGGGACCGTGGAGCCCGCCGTGGGGTGGCGTCC
ACGATGGAAACGCGGATGGTGGTAGCAAACGGAGAAACGCCGGCTCCGCG
GACGGTCGAGGTGAGCGGGCGCTGCTGGGGACGCCGCTGCGGGGAGTGAG
CGGAAGGGGT
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