EY729290 | Citrus Genome Database

Overview


Name	EY729290
Unique Name	EY729290
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	894

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11828	contig	Csv1_Contig11828:1..894.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.637e-16
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFE+SL DL ++E+HAYRKIRL  EDVQGKNVLT FW
Sbjct:   55 KIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFW 101

HSP 2 Score: 28.8758 bits (63), Expect = 4.637e-16
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFWGMDFTTDKLRSLVR 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 6.352e-15
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFE+SL DL  +E+H++RKIRL  ED+QGKNVLT FW
Sbjct:   55 KIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFW 101

HSP 2 Score: 28.8758 bits (63), Expect = 6.352e-15
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFWGMDFTTDKLRSLVR 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.073e-14
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL ++E+H+YRKIRL  EDVQGKNVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFW 101

HSP 2 Score: 25.0238 bits (53), Expect = 1.073e-14
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G + TTDKLRS V+
Sbjct:   97 LTNFWGMDVTTDKLRSLVK 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.073e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL ++E+ AYRKIRL  EDVQGKNVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFW 101

HSP 2 Score: 26.9498 bits (58), Expect = 1.073e-14
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G  FTTDKLRS V+
Sbjct:   97 LTNFWGMSFTTDKLRSLVK 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.811e-14
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFE+SL DL  +E+ AYRKIRL  EDVQG+NVLT FW
Sbjct:   55 KIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFW 101

HSP 2 Score: 28.8758 bits (63), Expect = 1.811e-14
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFWGMDFTTDKLRSLVR 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.705e-14
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL ++E++AYRKIRL  EDVQG+NVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFW 101

HSP 2 Score: 25.409 bits (54), Expect = 6.705e-14
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L  + G +FTTDKLRS V+
Sbjct:   97 LTQFWGMDFTTDKLRSLVK 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.705e-14
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL  +E+ ++RKIRL  EDVQGKNVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFW 101

HSP 2 Score: 27.7202 bits (60), Expect = 6.705e-14
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS V+
Sbjct:   97 LTNFWGMDFTTDKLRSLVK 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.132e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEVSL DL+ +E+ AYRKIRL  EDVQG+NVLT FW
Sbjct:   55 KIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFW 101

HSP 2 Score: 25.409 bits (54), Expect = 1.132e-13
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L  + G +FTTDKLRS V+
Sbjct:   97 LTQFWGMDFTTDKLRSLVK 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.470e-13
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFE+SL DL  +E++A+RKIRL  EDVQGKNVLT F+
Sbjct:   55 KIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFY 101

HSP 2 Score: 29.261 bits (64), Expect = 1.470e-13
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFYGMDFTTDKLRSLVR 115

[Close]

BLAST of EY729290 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.910e-13
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1

Query:  592 QIASEGSQHRVFEVSLXDLSHEEEHAYRKIRLXXEDVQGKNVLTTFW 732
            +IASEG +HRVFEV L DL  +E+ AYRKIRL  EDVQGKNVLT F+
Sbjct:   55 KIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFY 101

HSP 2 Score: 29.261 bits (64), Expect = 1.910e-13
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  816 LLNYLGHEFTTDKLRSWVR 872
            L N+ G +FTTDKLRS VR
Sbjct:   97 LTNFYGMDFTTDKLRSLVR 115

The following BLAST results are available for this feature:

BLAST of EY729290 vs. ExPASy Swiss-Prot

BLAST of EY729290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
RS3A2_VITVI	4.637e-16	74.47	40S ribosomal protein S3a-2 OS=Vitis vinifera GN=G...	[more]
RS3A_CATRO	6.352e-15	68.09	40S ribosomal protein S3a OS=Catharanthus roseus G...	[more]
RS3A_HELAN	1.073e-14	74.47	40S ribosomal protein S3a OS=Helianthus annuus GN=...	[more]
RS3A_ORYSJ	1.073e-14	74.47	40S ribosomal protein S3a OS=Oryza sativa subsp. j...	[more]
RS3A1_VITVI	1.811e-14	70.21	40S ribosomal protein S3a-1 OS=Vitis vinifera GN=G...	[more]
RS3A2_ARATH	6.705e-14	72.34	40S ribosomal protein S3a-2 OS=Arabidopsis thalian...	[more]
RS3A_TOBAC	6.705e-14	70.21	40S ribosomal protein S3a OS=Nicotiana tabacum GN=...	[more]
RS3A_BRARA	1.132e-13	72.34	40S ribosomal protein S3a OS=Brassica rapa GN=RPS3...	[more]
RS3A_CICAR	1.470e-13	68.09	40S ribosomal protein S3a OS=Cicer arietinum PE=2 ...	[more]
RS3A_DAUCA	1.910e-13	70.21	40S ribosomal protein S3a OS=Daucus carota GN=cyc0...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-015-A06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY729290 ID=EY729290; Name=EY729290; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGGACCAATGATGATGCTCCTTTCTCTTTACATCTGTGAAT
GGGATATGTTGTTTACTCAGATTTATTGGTATTATACTAGAGCGCATGTG
TATGTAGGCTCGTAGAGGAGTTGGACTAAAATTTTATAGGATACCTGTTT
ATGCATCACATGTAGATTAAATGCTTTTATTTGTAAGATTGGAATACACG
GGATCACACACATATAGGTTTGGTAATATTGACTTGCTTAGTTAATGTTT
GATTTCATATGTGGCCTAAGTTGGTTCTTCATGATGAATGACTAATGGTG
ATGCTCCTTTCTCCTTTAATCCATTGATGGAATATGTTGTTTACTCAGAT
ATATTGGTATTGTACTATAGTACTGAGTTGATTCAATGGCTTGTGTCTGT
AGGCTTGAAGGGGAGTAGAAGTAACACTTTATTGGATATTTGTTTATGCA
TGACATGGAGAATAAATTATTTTATTTTGGACATACATGCATGGTTGGTG
TACGTCAAGCTTTCACTGCATTCGGCCAACCAACTAGGCTATCTTTTGTG
GAACACTCACACACTCATTTTAATTGCTCGAGTCTTTTTAACAGATTGCA
TCAGAAGGGTCTCAGCACAGAGTGTTTGAGGTATCACTANGTGATCTTTC
TCATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGANANCTGAAGATG
TCCAAGGGAAGAATGTTTTGACTACCTTCTGGGTATACTTTAATGGATGG
GAAATGTTTTGTTTGCTTCACAAATTTTCACTCTGCTAGTGACATGCTAA
CGGTTTCACCATTTCCTTTTGAATTATTTAGGGCATGAATTCACTACAGA
CAAGCTGAGGTCTTGGGTTAGGAATGGATACTTGGATTGAAGCT