EY729284

Overview
NameEY729284
Unique NameEY729284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.343e-30
Identity = 68/83 (81.93%), Postives = 72/83 (86.75%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFMKV-IGIHIGLQGMDRAHRLGQTR 793
            DYMNYRKY+YLRLDGSSTIMDRRDMVRDFQHRSD  VFLLSTRAGGLGINLTAADTVIF +      + LQ MDRAHRLGQT+
Sbjct: 1240 DYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK 1322          

HSP 2 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3
Query:   39 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEVFI 155
            DSGKLQTLDILLKRLRA NHRVLLFAQMTKMLNILE ++
Sbjct: 1204 DSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYM 1242          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.142e-23
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +YM YRK+ Y+RLDGSS I +RRDMV DFQ+R+D  VFLLSTRAGGLGINLTAADTVIF        +  Q MDRAHRLGQT+ +
Sbjct: 1135 EYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1219          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.145e-22
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +YM YRK+ Y+RLDGSS I +RRDMV DFQ R+D  VFLLSTRAGGLGINLTAADTVIF        +  Q MDRAHRLGQT+ +
Sbjct: 1138 EYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1222          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.333e-22
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+Y RLDGS+ + DRRD V DFQ R D  VFLLSTRAGGLGINLTAADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1355 EYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1439          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.333e-22
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +YM +RK+RY+RLDGSS I  RRDMV DFQ R+D  VFLLSTRAGGLGINLTAADTVIF        +  Q MDRAHRLGQT+ +
Sbjct: 1190 EYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1274          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.333e-22
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+Y RLDGS+ + DRRD V DFQ R D  VFLLSTRAGGLGINLTAADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1453 EYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1537          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+YLRLDGS+ + DRRD V DFQ R +  +FLLSTRAGGLGINLT+ADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1456 EYLTYRNYKYLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1540          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+Y RLDGS+ + DRRD V DFQ R +  VFLLSTRAGGLGINLTAADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1452 EYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1536          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+Y RLDGS+ + DRRD V DFQ R +  VFLLSTRAGGLGINLTAADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1433 EYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1517          
BLAST of EY729284 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.697e-22
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDXXVFLLSTRAGGLGINLTAADTVIFM-KVIGIHIGLQGMDRAHRLGQTRML 799
            +Y+ YR Y+Y RLDGS+ + DRRD V DFQ R +  VFLLSTRAGGLGINLTAADTVIF        I  Q MDRAHRLGQTR +
Sbjct: 1250 EYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1334          
The following BLAST results are available for this feature:
BLAST of EY729284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
INO80_ARATH4.343e-3081.93DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
INO80_HUMAN5.142e-2367.06Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
INO80_MOUSE1.145e-2267.06Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_EMENI3.333e-2265.88Putative DNA helicase ino80 OS=Emericella nidulans... [more]
INO80_DROME3.333e-2267.06Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
INO80_ASPCL3.333e-2265.88Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
INO80_SCLS19.697e-2263.53Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
INO80_NEOFI9.697e-2264.71Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPTN9.697e-2264.71Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPOR9.697e-2264.71Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-014-H11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729284 ID=EY729284; Name=EY729284; organism=Citrus sinensis; type=EST; length=918bp
CCACGCGTCCGCCCACGCGTCCGCATACTTCTATGTAGGACTCTGGGAAG
CTTCAAACTCTTGATATATTATTGAAACGCTTGCGAGCGGAAAATCATCG
TGTTCTCTTGTTTGCTCAAATGACAAAAATGCTCAACATTCTTGAGGTAT
TTATAATTTTAACACAATGAACTTAATGGATTTTTCAATTTTCAATCTTT
TCATTTTCTAATTCATGCACATACACAAATTAAATTATCTCTTCAAGGTT
AGTGCGAGTTGGATTGGATCTCCTGACCTTTTGCTCTGCTGTTGAAATCA
AAGTAACTAAGCTTAATGCCTTGGGGACATTTTAAATCTGTCATTAACCT
AAATGCTAAATTACCTGATTAGCTTCTTGGGAATGGTGGGTTAAGAAATT
TCTATGACCCTGCCAAATTAATCCAGTGATTGAACTGTCATTTGAGTTTG
CTTCATTCTCTGATGTGGTCAATTAGAGTATTCTTATGTTTGGAGCTCCT
ATTGAGAAAGCATGTTGTAGTGCTAACTCTCTTGTTTACATTTCTAGGAT
TATATGAACTATAGGAAATACAGGTATCTCAGACTTGATGGATCCTCCAC
TATCATGGACCGGCGAGACATGGTCCGAGATTTCCAGCATAGGAGTGATA
TNNTTGTTTTCTTGCTGAGTACGAGAGCTGGTGGACTGGGGATTAACTTG
ACAGCTGCGGACACTGTCATTTTTATGAAAGTGATTGGAATCCACATTGG
ATTACAGGGCATGGACAGAGCTCACCGGTTGGGTCAAACAAGGATGTTAG
TTCCTGCCTGAAACTGTCATTAATTNATTTTTCCATGATTGGTAATGGCA
TGCCAATTGATGATGAATGTCGAAAGAAACCAATTATGTCTTGCTTATGA
GGAGAACTTTGCATATAA
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