EY729280

Overview
NameEY729280
Unique NameEY729280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.327e-41
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  284 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F V+W  +KDVPN+ LRHI   NNENKPVT+SRDT E+ L++  ++LKI  S
Sbjct:  383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIAS 546          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 9.327e-41
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  284 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F V+W  +KDVPN+ LRHI   NNENKPVT+SRDT E+ L++  ++LKI  S
Sbjct:  383 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIAS 546          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.327e-41
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  284 SDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            S+   VL    S + YN  DF    +  + ++IKSYSEDDIH+ IKY++W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F V+W  +KDVPN+ LRHI   NNENKPVT+SRDT E+ L++  ++LKI  S
Sbjct:  384 SEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG-------PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIAS 547          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.896e-40
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  266 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKI 787
            SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F VKW  +KDVPN  LRHI   NN+NKPVT+SRDT E+ L++  ++LKI
Sbjct:  383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKI 549          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.896e-40
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  266 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKI 787
            SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F VKW  +KDVPN  LRHI   NN+NKPVT+SRDT E+ L++  ++LKI
Sbjct:  383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKI 549          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.896e-40
Identity = 83/174 (47.70%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  266 SASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKI 787
            SAS    +   VL    + + YN  DF    +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LDA +     K        P++L FSVNGSG F G+AEM   VD+N     W  DKW G F VKW  +KDVPN  LRHI   NN+NKPVT+SRDT E+ L++  ++LKI
Sbjct:  383 SASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-------PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKI 549          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.347e-39
Identity = 86/199 (43.22%), Postives = 117/199 (58.79%), Query Frame = 2
Query:  200 FSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            F ++GG G  +    G    N + S+E      VL    +   YN  +F+   +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LD+ F    +K        P++L FSVNGSG F G+AEM   VD+      W  DKW G F V+W  +KDVPN  LRHI   NN+NKPVT+SRDT E+ L++  ++LKI  S
Sbjct:  338 FGQSGGAGSDSNS-PGNVQPNSAPSVE---SHPVLEKLKAAHSYNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISS 525          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 85/199 (42.71%), Postives = 114/199 (57.29%), Query Frame = 2
Query:  200 FSRAGGLGMPTELIRGPRAENKSASLEISDKKEVLSPTVSRDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            F ++GG    +  + G      + S+E      VL    +   YN  +F    +  + ++IKSYSEDDIH+ IKY +W ST +GNK+LD  F    +K        P++L FSVNGSG F G+AEM   VD+      W  DKW G F VKW  +KDVPN  LRHI   NN+NKPVT+SRDT E+ L++  ++LKI  S
Sbjct:  338 FGQSGGANSDSNSV-GNAQPTSAPSVE---SHPVLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG-------PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAS 525          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YD374_YEAST (YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae GN=YDR374C PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.425e-22
Identity = 53/147 (36.05%), Postives = 86/147 (58.50%), Query Frame = 2
Query:  359 EKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLD-KWNGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIFKS 796
            E ++F+VIKS S   + +     +WSST  GNK+L   + +  + A        +FLFFS+N SG+F G+AEM+  +  + D   W+ + K+   F V+W +++D+ N  L+     +NE KP+THSRDT EI    G+ ++ +FK+
Sbjct:  153 ENSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK-------VFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITHSRDTQEIPYSIGISIINLFKT 292          
BLAST of EY729280 vs. ExPASy Swiss-Prot
Match: YTDC1_HUMAN (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 63/223 (28.25%), Postives = 102/223 (45.74%), Query Frame = 2
Query:  152 NGRMWNGNDRYKSRDKFSRAGGLGMPTELIRGPRAENKSASLEISDKK-EVLSPTVS---RDQYNLPDFQVEYEKAKFYVIKSYSEDDIHKCIKYDVWSSTPNGNKKLDATFNEAEAKADETGTRCPIFLFFSVNGSGQFVGLAEMMGKVDFNXDMDFWQLDKW------NGFFPVKWHVIKDVPNTLLRHITP*NNENKPVTHSRDTXEIGLKQGLKMLKIF 790
            +G   +G+D  K   K  RA G+   + ++      + S S   S+KK E LS +V    +DQ +   + ++   A+F++IKS + +++       VWS+ P   KKL+  F  A +          + L FSV  SG+F G A +  +         W L          G F + W   +++P T   H+T   NE+KPV   RD  EI L+ G ++  +F
Sbjct:  287 SGSGTDGSDEKKKERK--RARGI---SPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQ--DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS----------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492          
The following BLAST results are available for this feature:
BLAST of EY729280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YTHD2_MACFA9.327e-4148.54YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN9.327e-4148.54YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN9.327e-4148.54YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD3_PONAB7.896e-4047.70YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE7.896e-4047.70YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN7.896e-4047.70YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YTHD1_HUMAN1.347e-3943.22YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD1_MOUSE1.759e-3942.71YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YD374_YEAST7.425e-2236.05YTH domain-containing protein YDR374C OS=Saccharom... [more]
YTDC1_HUMAN2.027e-1128.25YTH domain-containing protein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-014-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729280 ID=EY729280; Name=EY729280; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCGAAACCAGTGAGCAAGGTGACTCAACTGGGTTCTGATT
TATCAGCAGGCTTTTTGAAGGGATCCGACCCACTGGGAAATTTCTCGGCA
TTTTCTAACCAAAAACAAGGCTTTTTCCCAAATATGGTGAACTACAGCAC
AAATGGGAGAATGTGGAATGGAAATGATAGATATAAATCAAGAGATAAAT
TCAGTAGAGCTGGAGGTTTGGGAATGCCAACTGAACTAATTCGTGGTCCA
AGGGCAGAAAATAAGAGTGCTTCTTTAGAGATTTCTGACAAAAAAGAAGT
GCTGAGTCCCACAGTATCTAGAGATCAATATAACCTACCAGATTTTCAAG
TTGAGTATGAAAAAGCGAAGTTTTATGTCATCAAGTCCTACAGTGAAGAT
GACATTCATAAGTGCATTAAATATGATGTATGGTCAAGTACTCCAAATGG
CAATAAGAAGCTAGATGCAACTTTCAATGAGGCAGAAGCAAAGGCAGATG
AGACTGGCACAAGATGTCCAATCTTCCTCTTCTTTTCGGTCAATGGAAGT
GGACAATTTGTCGGCCTAGCTGAGATGATGGGTAAGGTGGACTTCAACAN
AGACATGGACTTCTGGCAACTTGACAAGTGGAATGGGTTCTTTCCTGTTA
AGTGGCATGTCATAAAAGACGTCCCTAACACTCTGTTGCGGCATATTACC
CCTTGAAATAATGAAAATAAGCCTGTCACTCATAGCAGGGACACCCANGA
GATTGGGTTAAAGCAGGGCTTAAAAATGCTGAAGATCTTTAAAAGTTCTC
CAGCAAAAACTCATTGTTAGATGATTTNACTTCTATGAAAATAACGAGAG
GTCTTCCCATGGCAGAAAAACACTAAGCCGCCCCTCTCNAATGGCTATTT
TATGAGTGTGATTTCA
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