EY729213

Overview
NameEY729213
Unique NameEY729213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729213 vs. ExPASy Swiss-Prot
Match: ATPX_SPIOL (ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 5.123e-39
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 2
Query:  308 PSLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAATAEISAALTKMKKETQLGSEQKLAVVREE 634
            PSLA EIEKA+LFDFNLTLPIIM EFL LMFALDKIYY+PLG+FMD+RD +IKE+L+ VKDTS EVKQLEEQA AVMRAA AEISAAL KMKKETQL  E KLA  R++
Sbjct:   72 PSLAEEIEKASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKK 180          
BLAST of EY729213 vs. ExPASy Swiss-Prot
Match: ATPX_CHLRE (ATP synthase subunit b', chloroplastic OS=Chlamydomonas reinhardtii GN=ATPG PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  311 SLAAEIEKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAATAEISAALTKMKKETQ 595
            ++ A  E   +FDFNLTLP++  EFL+LM  L+K +++P+G  +DERDN I+ KL SVKD + +V +L  +A  ++++A +++SA +   K   Q
Sbjct:   57 AMPAAAEAGKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDKLVLEAETILKSARSDVSAMINTKKAAKQ 151          
BLAST of EY729213 vs. ExPASy Swiss-Prot
Match: ATPX_TRIEI (ATP synthase subunit b' OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  329 EKAALFDFNLTLPIIMVEFLVLMFALDKIYYSPLGNFMDERDNAIKEKLNSVKDTSEEVKQLEEQAAAVMRAATAEISAALTKMKKETQLGSEQKLAVVREE 634
            EK  LFD N TLP++ ++FL+L F LDKI+Y PLG  +D R + I+E     K+   + KQL EQ          +    +   + E +  +  K+AV ++E
Sbjct:   15 EKGGLFDINATLPLMAIQFLLLAFVLDKIFYKPLGKAIDSRADYIRENQVKAKERLAKAKQLAEQYEQEFAQTRQKSQVVIVAAQAEAEKIAATKVAVAQKE 116          
The following BLAST results are available for this feature:
BLAST of EY729213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATPX_SPIOL5.123e-3978.90ATP synthase subunit b', chloroplastic OS=Spinacia... [more]
ATPX_CHLRE1.039e-1541.05ATP synthase subunit b', chloroplastic OS=Chlamydo... [more]
ATPX_TRIEI2.029e-1135.29ATP synthase subunit b' OS=Trichodesmium erythraeu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-014-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729213 ID=EY729213; Name=EY729213; organism=Citrus sinensis; type=EST; length=924bp
CACGCGTCCGAGAAGATAAATCCTCTTCTTCACAAAAAATTTCTCTCCTT
CACCATTTCACTCAAAAACAAAAGCATTTTCAGCAAACGCAAACGCAAAA
CTAGTAAAATTTCAATCTGCCATGGCTAGCATGATCGTGGCATCCTCCAA
TGCCAAGCCACTCTCTCCACTGCCCATTACTTCTCAATCACCAAAACCCA
GAATCCAAATCCCCCAAATCAAAATCCCACAAAAGTTGCTTAAACTCTCC
TCCTCCGCTCTCAAATCACTCTCCGCTGTGGCCGTCACGTCGCTAGCATT
TTCCCCTCCGTCTCTGGCAGCTGAAATCGAAAAGGCAGCACTCTTCGATT
TCAACCTAACCTTGCCCATTATCATGGTTGAGTTCTTGGTTCTGATGTTC
GCGTTGGACAAGATTTACTACTCTCCCCTCGGGAACTTCATGGACGAGAG
GGACAATGCTATCAAGGAAAAGCTCAACAGCGTCAAGGACACTTCCGAGG
AAGTGAAGCAGCTAGAAGAGCAAGCTGCTGCCGTCATGAGGGCTGCCACA
GCGGAGATATCGGCGGCCTTGACTAAGATGAAGAAGGAGACTCAGTTGGG
AAGTGAGCAGAAACTTGCTGTGGTGAGGGAGGAAAATTGAGGGTGACCTC
CAGGAAGCTTGGGCTAATTTTGAGAGGGACAAGGAGGAAACCATTAAGGT
CCTTAGACCGCAGATGGTGGTCCCACGTAAGAAGATGGTAGGAAAGGGTG
TCCCGTTCTGTACTTCATTTCAAAGAACAAAGTGGGAGGAAATGTGGGGT
GGTGGGGTGAGGGGAGGGTGCGGCAGGAGTCCGGCCGGACGAGTTAGAGT
NTGAGATGAGGTGCAGAGGGCGCGGTCAGCTAGGGGTGTGCGATGGGCAG
GCTGGGGGGGTTGAGGGAGAGGGG
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