EY729165

Overview
NameEY729165
Unique NameEY729165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.021e-94
Identity = 167/233 (71.67%), Postives = 198/233 (84.98%), Query Frame = 2
Query:   14 KSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTG 712
            KSNEWTG  SFN +SLH IG +PNPYE+AITIIG+TLA FDEDNLIPC+GFGDA+THDQ+VFSF+ +   C+GFEEVL+ Y+ IVP L+LAGPTS+AP+++ AM IVE+SGGQYHVLVIIADGQVTRSV+T +G+LS QEQKT+ +IV AS  PLSIVLVGVGDGPW+ M++FDD IPAR FDNFQFVNFT IM+KN   S KET FAL+ALMEIP QYKA +EL ++GR  G
Sbjct:  131 KSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNG 363          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.274e-94
Identity = 168/233 (72.10%), Postives = 195/233 (83.69%), Query Frame = 2
Query:   14 KSNEWTGKVSFNNRSLHAIGDTPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTG 712
            KSNEWTG  SFN +SLH + +TPNPYE+AITIIG+TLA FDEDNLIPC+GFGDA+THDQ+VFSF+ +   C+GFEEVLA YR IVP L+LAGPTS+AP++E AM +VE+S GQYHVLVIIADGQVTRSV+T  G LS QEQKT+ +IV AS+ PLSIVLVGVGDGPW+ MQ+FDD IPAR FDNFQFVNFT IMSKN   S KET FAL+ALMEIP QYKA +EL ++G   G
Sbjct:  165 KSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNG 397          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.438e-50
Identity = 107/232 (46.12%), Postives = 144/232 (62.07%), Query Frame = 2
Query:   14 KSNEWTGKVSFNNRSLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSF---HDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 697
            KSN + G+ +F+ R LH I     NPY++ I I+GKTL+ FD D  IP +GFGD    D  +F+    +D    C+GFEEVL  Y  + P + ++GPT++ P+++ A++I  K    YH+LVI+ADGQVT             E+   K+I AAS YPLSI++VGVGDGPW  M +FDD IP R FDNF FV+F  +M         + +FAL ALMEIP QYKA  ELG++
Sbjct: 7327 KSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEIC-KEKHSYHILVIVADGQVTN------------EKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE4_MOUSE (Copine-4 OS=Mus musculus GN=Cpne4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 73/226 (32.30%), Postives = 115/226 (50.88%), Query Frame = 2
Query:   47 NNRSLHAIGD-TPNPYEKAITIIGKTLAPFDEDNLIPCFGFG-----DATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPARE---FDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            N+ SLH I    PN Y KA+  +G+    +D D + P FGFG     + T       +F++D+  C G + V+  Y++ +P L+L GPT+ AP+++     A+ +   K   QY +L+I+ DG +T   +T +            +IV AS  P+S+++VGVG+  + DMQ  D      + P  E    D  QFV F     K+A+P+    A A + L E+P Q
Sbjct:  323 NSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTRE------------AIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNF--KHASPA----ALAKSVLAEVPNQ 530          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE4_HUMAN (Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 73/226 (32.30%), Postives = 115/226 (50.88%), Query Frame = 2
Query:   47 NNRSLHAIGD-TPNPYEKAITIIGKTLAPFDEDNLIPCFGFG-----DATTHDQEVFSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPARE---FDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            N+ SLH I    PN Y KA+  +G+    +D D + P FGFG     + T       +F++D+  C G + V+  Y++ +P L+L GPT+ AP+++     A+ +   K   QY +L+I+ DG +T   +T +            +IV AS  P+S+++VGVG+  + DMQ  D      + P  E    D  QFV F     K+A+P+    A A + L E+P Q
Sbjct:  323 NSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTRE------------AIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNF--KHASPA----ALAKSVLAEVPNQ 530          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE7_HUMAN (Copine-7 OS=Homo sapiens GN=CPNE7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20
Identity = 76/226 (33.63%), Postives = 112/226 (49.56%), Query Frame = 2
Query:   47 NNRSLHAIGD-TPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE--AAMDIVEKSGG---QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPARE---FDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            N+ SLH I    PN Y KA+  +G+    +D D      GFG       EV      +F+ +   C G + V+  Y+N +P ++L GPT+ AP++   A +   E+S G   QY++L+I+ DG VT   +T +            +IV AS  P+SI++VGVG+  + DMQ  D      + P  E    D  QFV F  +  KNA+P+    A A   L E+P Q
Sbjct:  398 NSCSLHYINPYQPNEYLKALVSVGEICQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPRVQLYGPTNVAPIISKVARVAAAEESTGKASQYYILLILTDGVVTDMADTRE------------AIVRASRLPMSIIIVGVGNADFTDMQVLDGDDGVLRSPRGEPALRDIVQFVPFREL--KNASPA----ALAKCVLAEVPKQ 605          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE7_MOUSE (Copine-7 OS=Mus musculus GN=Cpne7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.839e-20
Identity = 75/226 (33.19%), Postives = 112/226 (49.56%), Query Frame = 2
Query:   47 NNRSLHAIGD-TPNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE--AAMDIVEKSGG---QYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDD-----KIPARE---FDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            N+ SLH I    PN Y +A+  +G+    +D D      GFG       EV      +F+ +   C G + V+  Y+N +P ++L GPT+ AP++   A M   E+S G   QY++L+I+ DG VT   +T +            +IV AS  P+S+++VGVG+  + DMQ  D      + P  E    D  QFV F  +  KNA+P+    A A   L E+P Q
Sbjct:  322 NSCSLHHINPYQPNEYLRALVAVGEVCQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPKVQLYGPTNVAPIISKVARMAAAEESTGEASQYYILLILTDGVVTDMSDTRE------------AIVRASHLPMSVIIVGVGNADFTDMQILDGDDGVLRSPRGEPALRDIVQFVPFREL--KNASPA----ALAKCVLAEVPKQ 529          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.260e-20
Identity = 69/220 (31.36%), Postives = 103/220 (46.82%), Query Frame = 2
Query:   56 SLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFD-DKIPAR----EFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            SLH +  T  N Y  A+  +G  +  +D D L P FGFG     D +V      +F+  +  C G + ++  YR  +P +RL GPT++AP++      AA    ++S  QY VL+++ DG VT              + T K++V AS  P+S+++VGVG   +E M++ D D  P R    E      V F         P E     A   L E+P Q
Sbjct:  303 SLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLTDGAVT------------DVEATCKAVVDASKLPMSVIIVGVGGADFEVMEQLDADGGPLRTRSGEAAARDIVQFVPYRRFQNAPRE---TLAQTVLAEVPTQ 507          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 68/223 (30.49%), Postives = 107/223 (47.98%), Query Frame = 2
Query:   56 SLHAIGDTP-NPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVE-----AAMDIVEKSGGQYHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFD-DKIP-------AREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            SLH +  T  N Y  A+  +G  +  +D D L P FGFG     D +V      +F+  +  C G + ++  YR  +P +RL GPT++AP++      AA    + +  QY +L+++ DG VT              + T +++V AS+ P+S+++VGVG   +E M++ D D  P       A   D  QFV +    +    P E   A A   L E+P Q
Sbjct:  304 SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAHQGTASQYFMLLLLTDGAVT------------DVEATREAVVRASNLPMSVIIVGVGGADFEAMEQLDADGGPLHTRSGQAAARDIVQFVPYRRFQN---APRE---ALAQTVLAEVPTQ 508          
BLAST of EY729165 vs. ExPASy Swiss-Prot
Match: CPNE6_MOUSE (Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.657e-18
Identity = 73/227 (32.16%), Postives = 108/227 (47.58%), Query Frame = 2
Query:   47 NNRSLHAIGDT-PNPYEKAITIIGKTLAPFDEDNLIPCFGFGDATTHDQEV-----FSFHDDHTPCHGFEEVLACYRNIVPNLRLAGPTSYAPVVEAAMDIV--EKSGGQ---YHVLVIIADGQVTRSVNTGDGELSSQEQKTIKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDK---------IPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQ 667
            +++SLH +    PN Y +A+  +G     +D D   P FGFG     + EV      +F  ++  C     V+A YR  +P ++L GPT+ AP++    +    E+S GQ   Y VL+++ DG V            S   +T  +IV AS  P+SI++VGVG+  + DM+  D           +PA   D  QFV F     K+A PS    A A   L E+P Q
Sbjct:  322 SSQSLHCLSPRQPNHYLQALRTVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVV------------SDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPKGVPAAR-DIVQFVPFRDF--KDAAPS----ALAKCVLAEVPRQ 529          
The following BLAST results are available for this feature:
BLAST of EY729165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RGLG2_ARATH1.021e-9471.67E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.274e-9472.10E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL3.438e-5046.12Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE4_MOUSE5.173e-2232.30Copine-4 OS=Mus musculus GN=Cpne4 PE=2 SV=1[more]
CPNE4_HUMAN5.173e-2232.30Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1[more]
CPNE7_HUMAN2.174e-2033.63Copine-7 OS=Homo sapiens GN=CPNE7 PE=2 SV=1[more]
CPNE7_MOUSE2.839e-2033.19Copine-7 OS=Mus musculus GN=Cpne7 PE=2 SV=1[more]
CPNE1_MOUSE8.260e-2031.36Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE1_HUMAN2.034e-1830.49Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE6_MOUSE2.657e-1832.16Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-013-D04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729165 ID=EY729165; Name=EY729165; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGCTAAAAGCAATGAATGGACTGGCAAAGTTTCATTCAATA
ATCGGAGCCTTCATGCCATTGGCGACACACCTAATCCATATGAGAAAGCC
ATCACTATCATTGGAAAGACTCTGGCTCCATTTGATGAAGACAACTTAAT
TCCTTGTTTTGGTTTTGGTGATGCTACCACACATGATCAAGAAGTGTTTA
GTTTTCATGATGATCATACCCCGTGCCATGGTTTTGAAGAAGTTTTGGCC
TGCTATAGAAACATTGTTCCAAACTTGCGACTTGCAGGACCAACTTCTTA
TGCTCCGGTGGTTGAGGCTGCAATGGACATTGTGGAGAAGAGTGGAGGCC
AGTATCATGTTTTGGTTATCATTGCAGATGGCCAGGTTACAAGGAGTGTC
AATACAGGTGATGGAGAACTGAGTTCACAAGAACAGAAAACAATAAAGTC
AATTGTTGCTGCAAGTTCATATCCACTTTCCATTGTGCTTGTTGGAGTCG
GTGATGGACCTTGGGAAGACATGCAGAAATTTGATGACAAGATCCCTGCA
CGTGAATTTGATAATTTTCAGTTTGTTAATTTTACCGCCATTATGTCAAA
AAATGCAACTCCATCTGAGAAAGAAACAGCTTTTGCTCTTGCCGCTCTCA
TGGAGATACCTATTCAATACAAAGCTGCAGTAGAACTTGGTATTATGGGA
CGCACGACAGGGAGAGCNAAAGAAATAGCTCCACGACCTCCTCCAGCTCC
TTATTCTCGCCGTGCCCTGNCAGAACGTCAACCAGGCGGTGGTTCAACCC
CTGTNGCGGAAACCCAGGCTTGCCCATTTTGCTGACCATTGCAAAGGACT
TGGCCTTTGGCTGTGG
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