EY729123

Overview
NameEY729123
Unique NameEY729123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729123_ssr906 microsatellite EY729123_ssr906:906..917. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11812 contig Csv1_Contig11812:1..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.137e-70
Identity = 135/207 (65.22%), Postives = 161/207 (77.78%), Query Frame = 1
Query:   94 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGREKGA*SVANS*WGWG*SLGXIFFGGNSGVIWGLF 714
            MA+ +SP ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASF+EGEPSTAP LTLTGR+K    +  +  GW    G  FFGG SGVIW  F
Sbjct:    1 MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTA-DGWAKFSGGFFFGGISGVIWAYF 205          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 3.657e-69
Identity = 136/208 (65.38%), Postives = 158/208 (75.96%), Query Frame = 1
Query:   94 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGREKGA*SVANS*WGWG*SLGXIFFGGNSGVIWGLF 714
            MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGR+K    +  +  GW    G  FFGG SGV W  F
Sbjct:    1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTA-DGWAKFTGGFFFGGISGVTWAYF 207          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.237e-69
Identity = 138/208 (66.35%), Postives = 158/208 (75.96%), Query Frame = 1
Query:   94 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGREKGA*SVANS*WGWG*SLGXIFFGGNSGVIWGLF 714
            MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGR+K    + ++  GW    G  FFGG SGV W  F
Sbjct:    1 MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSA-DGWAKFTGGFFFGGVSGVTWACF 204          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.655e-62
Identity = 123/201 (61.19%), Postives = 145/201 (72.14%), Query Frame = 1
Query:  112 PMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTGREKGA*SVANS*WGWG*SLGXIFFGGNSGVIWGLF 714
            PMASQ+  S       +   PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASF+EGEPSTAP LTLTGR+K A  +  +  GW    G  FFGG SG +W  F
Sbjct:    8 PMASQVMKS-----GLACSKPRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTA-EGWSQFTGGFFFGGVSGAVWAYF 197          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  274 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGE 576
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F +G+
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQGQ 105          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-25
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 1
Query:  268 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTG 609
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+ P  T  G
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEG 117          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-25
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  268 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGE 576
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SF+  +
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTND 105          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  268 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGEPSTAPGLTLTG 609
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+ P  T  G
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEG 117          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.101e-24
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  274 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSE 570
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F +
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAFGQ 103          
BLAST of EY729123 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.583e-24
Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  274 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFSEGE 576
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F   E
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSE 105          
The following BLAST results are available for this feature:
BLAST of EY729123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA1.137e-7065.22Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH3.657e-6965.38Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL6.237e-6966.35Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU5.655e-6261.19Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ODOSI2.481e-2553.47Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_THEEB3.241e-2543.86Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_GUITH3.241e-2549.51Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_SYNEN2.101e-2442.98Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PHATR2.101e-2454.55Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_CYACA3.583e-2447.52Photosystem I reaction center subunit XI OS=Cyanid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-G10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729123 ID=EY729123; Name=EY729123; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTCTATACAAAGCAGA
GCTCTTGGTAGAAACAGAAGTCTTTTAACAAACACAATCTCAAATGGCTT
CTGTTTCTTCTCCAATGGCCAGCCAGCTCAAGAGTAGCTTTACTTCACCA
GTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAG
GGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCCTTGTCAAAGCTATCCAAT
CTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGATCCATTC
ATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTGCATGGTA
CCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAG
GAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTT
AAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATT
GGCAGCTGGTGGCCTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATG
GAATTGCTTCATTCAGTGAAGGAGAGCCATCCACTGCTCCAGGCTTAACA
TTGACCGGAAGGGAGAAAGGAGCCTGATCAGTTGCAAACAGCTGATGGGG
GTGGGGCTAGTCACTGGGANGGATCTTCTTTGGTGGAAATTCTGGTGTCA
TTTGGGGCTTATTTCCTGCTTTACGTTCTTAACCTTCCCTACTTCGTTAA
ATAGAACTATGTAACATCTACTCTTTGGTTTTAAGATCCAATGTATCTCA
NNTTGCTACTCTGTAAATCTACTGTTTTGGGATTGTTATTGCAAATGAAA
CTGGCTCATTAACTGANANNANNACANNAANAGAAAANGAACANAGACAC
CAACCCAACAACAACAACACCGGG
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