EY729116

Overview
NameEY729116
Unique NameEY729116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_BORPD (2-isopropylmalate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=leuA PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.408e-71
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFA Q+PDAVWEVPYLPIDPADLGRSYDAVIRVNSQ GKGGVSYLLE EHGL+LPRRLQIEF R
Sbjct:  285 LVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFAQQKPDAVWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLVLPRRLQIEFSR 410          

HSP 2 Score: 43.5134 bits (101), Expect = 1.408e-71
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  380 AIQRGLDKTGR*VAAGDVQTSLDREYLEQKIRGEGVRHRXXG 505
            AIQR  D+TGR V A DV T  +REYLEQ    + VRHR  G
Sbjct:  411 AIQRVTDETGREVTADDVHTIFNREYLEQHSPWKLVRHRIDG 452          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_AZOSB (2-isopropylmalate synthase OS=Azoarcus sp. (strain BH72) GN=leuA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.731e-59
Identity = 100/124 (80.65%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALNLY+QGVHPGLDFS I+EV R  E+C QLP+HPRHPY GDLVFTAFSGSHQDAIKKGFA+QQPDAVWEVPYLP+DPADLGRSY+++IRVNSQ GKGG++YLLE E+GL++PRRLQ+EF
Sbjct:  291 LVTLALNLYSQGVHPGLDFSRINEVARTVEHCTQLPIHPRHPYVGDLVFTAFSGSHQDAIKKGFAVQQPDAVWEVPYLPVDPADLGRSYESIIRVNSQSGKGGIAYLLEAEYGLVMPRRLQVEF 414          

HSP 2 Score: 29.6462 bits (65), Expect = 6.731e-59
Identity = 19/52 (36.54%), Postives = 27/52 (51.92%), Query Frame = 2
Query:  377 AAIQRGLDKTGR*VAAGDVQTSLDREYLEQKIRGEGVRH---RXXGKXGLSL 523
            AAIQR  D+ G  ++AGD+  + + EYL        V H      G+ G+SL
Sbjct:  416 AAIQRITDERGTELSAGDIWRAFEEEYLAVAAPYAYVEHHLAEHGGQQGISL 467          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_CUPTR (2-isopropylmalate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=leuA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.144e-58
Identity = 108/126 (85.71%), Postives = 114/126 (90.48%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEFRR 378
            L TLALNLYTQGV P LDFSDID VR+C E+CNQLPVHPRHPY GDLVFTAFSGSHQDAI+KGFA QQPDA+WEVPYLPIDPADLGRSYDAVIRVNSQ GKGG++YLLE  HGL LPRRLQIEF R
Sbjct:  283 LVTLALNLYTQGVAPELDFSDIDAVRQCVEHCNQLPVHPRHPYVGDLVFTAFSGSHQDAIRKGFAQQQPDAIWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGMAYLLEQVHGLYLPRRLQIEFSR 408          

HSP 2 Score: 21.9422 bits (45), Expect = 1.144e-58
Identity = 13/39 (33.33%), Postives = 19/39 (48.72%), Query Frame = 2
Query:  380 AIQRGLDKTGR*VAAGDVQTSLDREYLEQKIRGEGVRHR 496
            A+Q   D TG   +A D+     REYL ++     V H+
Sbjct:  409 AVQAMTDDTGLEASADDLYGLFRREYLARETPLRYVSHQ 447          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_BURPP (2-isopropylmalate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=leuA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.125e-55
Identity = 99/124 (79.84%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALNLYTQGV PGLDFS+I+EV R AE C QLP+HPRHPY GDLVFTAFSGSHQDAIKKGFA+Q+PDAVWEVPY+PIDPADLGR+YD+VIRVNSQ GKGG++YLLE  +G++LPRRLQ++F
Sbjct:  283 LVTLALNLYTQGVDPGLDFSNINEVARTAEECTQLPIHPRHPYVGDLVFTAFSGSHQDAIKKGFAVQKPDAVWEVPYMPIDPADLGRTYDSVIRVNSQSGKGGIAYLLEQGYGVVLPRRLQVDF 406          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_BURXL (2-isopropylmalate synthase OS=Burkholderia xenovorans (strain LB400) GN=leuA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.365e-54
Identity = 98/124 (79.03%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALNLYTQGV PGLDFS+I+EV R AE C QLP+HPRHPY GDLVFTAFSGSHQDAIKKGFA+Q+PDA+WEVPY+PIDPADLGR+YD+VIRVNSQ GKGG++YLLE  +G++LPRRLQ++F
Sbjct:  283 LVTLALNLYTQGVDPGLDFSNINEVARTAEECTQLPIHPRHPYVGDLVFTAFSGSHQDAIKKGFAVQKPDAMWEVPYMPIDPADLGRTYDSVIRVNSQSGKGGIAYLLEQGYGVVLPRRLQVDF 406          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_AZOVD (2-isopropylmalate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=leuA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.365e-54
Identity = 100/124 (80.65%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALNLYTQGV PGLDFSDID VR+  E CNQLPVHPRHPY GDLV TAFSGSHQDAI+KGFA Q P+ VWEVPYLPIDPAD+GRSY+AVIRVNSQ GKGG++YLLE E+G+ LPRR+QIEF
Sbjct:  285 LVTLALNLYTQGVDPGLDFSDIDAVRKVVEECNQLPVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQDPEGVWEVPYLPIDPADIGRSYEAVIRVNSQSGKGGIAYLLEQEYGISLPRRMQIEF 408          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_PSEAE (2-isopropylmalate synthase OS=Pseudomonas aeruginosa GN=leuA PE=3 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 3.361e-53
Identity = 96/124 (77.42%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALN+YTQG+HP LDFSDID VR+  E CNQLPVHPRHPY GDLV TAFSGSHQDAI+KGFA Q+ DA+WEVPYLPIDPAD+GR Y+AVIRVNSQ GKGG+++LLE E+G+ LPRR+QIEF
Sbjct:  285 LVTLALNMYTQGLHPQLDFSDIDAVRKVVEECNQLPVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQKEDAIWEVPYLPIDPADIGRDYEAVIRVNSQSGKGGITFLLEQEYGISLPRRMQIEF 408          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_PSEA7 (2-isopropylmalate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=leuA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.361e-53
Identity = 96/124 (77.42%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALN+YTQG+HP LDFSDID VR+  E CNQLPVHPRHPY GDLV TAFSGSHQDAI+KGFA Q+ DA+WEVPYLPIDPAD+GR Y+AVIRVNSQ GKGG+++LLE E+G+ LPRR+QIEF
Sbjct:  285 LVTLALNMYTQGLHPQLDFSDIDAVRKVVEECNQLPVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQKEDAIWEVPYLPIDPADIGRDYEAVIRVNSQSGKGGITFLLEQEYGISLPRRMQIEF 408          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_PSEMY (2-isopropylmalate synthase OS=Pseudomonas mendocina (strain ymp) GN=leuA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.861e-53
Identity = 98/124 (79.03%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L TLALNLYTQGV P LDFSDID VR+  E CNQ+PVHPRHPYAGDLV TAFSGSHQDAI+KGFA Q+ DAVWEVPYLPIDPAD+GR Y+AVIRVNSQ GKGG+++LLE E+G+ LPRR+QIEF
Sbjct:  285 LVTLALNLYTQGVDPQLDFSDIDAVRKVVEDCNQIPVHPRHPYAGDLVHTAFSGSHQDAIRKGFAQQKDDAVWEVPYLPIDPADIGRDYEAVIRVNSQSGKGGITFLLEQEYGISLPRRMQIEF 408          

HSP 2 Score: 22.3274 bits (46), Expect = 3.861e-53
Identity = 13/46 (28.26%), Postives = 20/46 (43.48%), Query Frame = 2
Query:  383 IQRGLDKTGR*VAAGDVQTSLDREYLEQKIRGEGVRHRXXGKXGLS 520
            +QR  D+ G  + A  +   L+ EYL+         HR   + G S
Sbjct:  412 VQRETDRLGLEMTAAQIYQLLESEYLQASAPYALKGHRLQEENGTS 457          
BLAST of EY729116 vs. ExPASy Swiss-Prot
Match: LEU1_PSEPF (2-isopropylmalate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=leuA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.115e-52
Identity = 94/124 (75.81%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LGTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFALQQPDAVWEVPYLPIDPADLGRSYDAVIRVNSQPGKGGVSYLLEHEHGLLLPRRLQIEF 372
            L T+ALN+YTQG++P LDFSDID VR+  E CNQ+ VHPRHPY GDLV TAFSGSHQDAI+KGFA Q+PD +WEVPYLPIDPAD+GRSY+AVIRVNSQ GKGG++YLLE E+G+ LPRR+QIEF
Sbjct:  285 LVTVALNMYTQGINPDLDFSDIDGVRKVVEECNQIQVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQKPDTLWEVPYLPIDPADIGRSYEAVIRVNSQSGKGGIAYLLEQEYGISLPRRMQIEF 408          

HSP 2 Score: 23.0978 bits (48), Expect = 1.115e-52
Identity = 14/46 (30.43%), Postives = 20/46 (43.48%), Query Frame = 2
Query:  383 IQRGLDKTGR*VAAGDVQTSLDREYLEQKIRGEGVRHRXXGKXGLS 520
            +QR  D+ G  + A  +   L  EYL+       V HR   + G S
Sbjct:  412 VQRETDRLGLEMTAQQIHALLHSEYLQANTPYALVSHRLQEENGNS 457          
The following BLAST results are available for this feature:
BLAST of EY729116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
LEU1_BORPD1.408e-7194.442-isopropylmalate synthase OS=Bordetella petrii (s... [more]
LEU1_AZOSB6.731e-5980.652-isopropylmalate synthase OS=Azoarcus sp. (strain... [more]
LEU1_CUPTR1.144e-5885.712-isopropylmalate synthase OS=Cupriavidus taiwanen... [more]
LEU1_BURPP6.125e-5579.842-isopropylmalate synthase OS=Burkholderia phytofi... [more]
LEU1_BURXL1.365e-5479.032-isopropylmalate synthase OS=Burkholderia xenovor... [more]
LEU1_AZOVD1.365e-5480.652-isopropylmalate synthase OS=Azotobacter vineland... [more]
LEU1_PSEAE3.361e-5377.422-isopropylmalate synthase OS=Pseudomonas aerugino... [more]
LEU1_PSEA73.361e-5377.422-isopropylmalate synthase OS=Pseudomonas aerugino... [more]
LEU1_PSEMY3.861e-5379.032-isopropylmalate synthase OS=Pseudomonas mendocin... [more]
LEU1_PSEPF1.115e-5275.812-isopropylmalate synthase OS=Pseudomonas fluoresc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729116 ID=EY729116; Name=EY729116; organism=Citrus sinensis; type=EST; length=871bp
CTGGGTACGCTGGCCTTGAACCTCTACACCCAGGGCGTGCACCCGGGCCT
GGACTTCTCGGACATCGATGAAGTGCGCCGCTGCGCCGAGTACTGCAACC
AGTTGCCCGTGCACCCGCGCCACCCGTACGCCGGCGACCTGGTCTTCACG
GCCTTCTCCGGTTCGCATCAGGACGCCATCAAGAAGGGCTTTGCCCTGCA
ACAGCCCGACGCCGTCTGGGAAGTGCCGTACCTGCCGATCGACCCGGCCG
ACCTCGGCCGCAGCTACGACGCCGTGATCCGCGTCAACAGCCAACCGGGC
AAGGGCGGGGTGTCGTACCTGCTCGAACACGAGCACGGCCTGTTGTTGCC
GCGCCGCCTGCAGATCGAATTCAGGCGCGGCCATCCAGCGCGGTCTCGAC
AAGACCGGCCGCTAAGTCGCGGCCGGAGACGTGCAGACCAGTCTCGATCG
CGAGTACCTGGAACAGAAGATCCGGGGGGAAGGTGTGCGCCACCGGTTNN
AGGGGAAGNNTGGCTTGTCCCTCTGTTTTTGTGGGGGNGGGGGTGGTGGA
GGGGGGGTGAGGGGGGGAGGATGTTGGGCCGGGCGGGTCCGCGTCACCTA
CTCTTTGTCTCGGGTGCGGGGCCGCCCGCCGTGAGGCGGGGCGGCGCGGC
GCCCCCGGCCGCCGGCGGTGCGCCGCCGGCGCTGGAGTCCCGGCGTGCCG
ACGGGAGCGCGTGGCCCGGGCCCGGGCCGAGTGTGCTGTGAATCGCTGTT
ACGGCCGCGGTTCCCGCTCGCCCCTCCTGTGTTGTGGAGTTGATGAGGGG
ATACGTCGGCGTTTGGGGCAGCGACGCGCGGAGCGATGTACCACTCTGTC
AGGGGGCTCTCCGCGCCATCC
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