EY729081

Overview
NameEY729081
Unique NameEY729081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729081 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 47/157 (29.94%), Postives = 69/157 (43.95%), Query Frame = 2
Query:  170 KIPPSDDPTTGVRSKDVVISSEPPVFARIFIPYEA---------QNPNQNKL-PLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADLGXSL-IXXXXXXXNIAHTLAFR 607
            K+P + +P  GV S DV+I  +  + +R++ P +A         QNP   ++ P++ +  GG F   SA    Y   C        A+VVSV Y   P+   P  Y+D WA L WV S +       WL    D    + +       NI H +A R
Sbjct:   52 KVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS-------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVR 201          
BLAST of EY729081 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 47/165 (28.48%), Postives = 67/165 (40.61%), Query Frame = 2
Query:  170 KIPPSDDPTTGVRSKDVVISSEPPVFARIFIPYEAQNPNQNKL------------PLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADLGXSL-IXXXXXXXNIAHTLAFRVGFIGV 625
            K+  + +P  GV S DV+I     + +R++ P  A       +            P++ +  GG F   SA    Y   C         +VVSV Y   P+ P P  Y+D W ALNWV S +       WL    D    + +       NIAH +A R G  G+
Sbjct:   52 KVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGI 209          
The following BLAST results are available for this feature:
BLAST of EY729081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GI1L3_ARATH6.033e-1329.94Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.344e-1228.48Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-C09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729081 ID=EY729081; Name=EY729081; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCAAACACAAAGAACCCTTCTTCTCTTTTATGATTATATT
TCAAACCGAGGCTTCAAATTAAAAACATGGCATCAAGCGACTCGGAAATT
GCAAAAGAATTCCGATTCTTCCGGGTTTACAAAGACGGCCGGGTTGAGTT
ATTCGGACCCGACTGCGAAAAGATCCCACCCTCCGATGACCCCACCACCG
GCGTCCGATCCAAAGACGTTGTTATTTCGTCCGAACCACCCGTGTTTGCT
CGTATCTTCATTCCGTATGAAGCCCAAAACCCTAACCAGAATAAGCTCCC
TCTCTTATTCTACGTGCGTGGCGGCGGATTCTGCGGGCAGTCCGCCTTTG
GTCCGCGGTATCATAATTTCTGTAGCGTCTTTTCTGCACAAGCTAATGCT
ATAGTGGTGTCCGTGGAATATGGGAATTTCCCGGATCGACCCATACCCGC
TTGTTACGAAGACTCGTGGGCTGCACTCAACTGGGTGGCGTCCCATGCTG
GCGGAAATGGACCCGAGCCATGGTTGAATGATCACGCTGATTTGGGGANN
AGTTTGATTGGAGGAGCCANCGCTGGAGGGAATATTGCACACACTCTGGC
GTTTCGGGTCGGGTTCATCGGGGTTACCTTGTGTAAAGTTGGTGGGGGGT
GATCCTGGTGCATCCCATTTTTGGTTGGCCTAATCCTGANAAGATTGCAA
GGTGGTGGTTTTGGTGTCCACCAACCCCCGGGTTCAGGTCCCTCCGGTGG
AACCCCCCGCAAAGGATCTGGCCAGCTTGGCTGGAAACGGGGTTTGATTT
TCGCCGCCGGGCAAGATTTTCGAAACCCGGTGGCTTGACTCACTCGCAGA
CTCGGACAAATTGGGTGGAAGGACGGGGGCCCTCTTGGCGCCC
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