EY729029

Overview
NameEY729029
Unique NameEY729029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729029 vs. ExPASy Swiss-Prot
Match: PPOM_TOBAC (Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.548e-45
Identity = 99/160 (61.88%), Postives = 120/160 (75.00%), Query Frame = 3
Query:  291 DALCKALGKDEVCLKSKVLSLSYSHDGKSALENWSL-SSSNQDKQSQGLSFDAVIMTASLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVFITAFKKENVGKPLQGFGVLVPSKEQXNGLKTLGTLFSSMMFPDRAPKDXVLYTTLLXEVAQR-MGKAQR 764
            DA+CK L +DE+ L S+VL LS S    SA+++WS+ S+S   +QS+  SFDAVIMTA LC+VK MKI K GN F L+F+PEV Y+PLSV IT FK+ENV  PL+GFGVLVPSKEQ +GLKTLGTLFSSMMFPDRAP +  LYTT +     R + KA R
Sbjct:  247 DAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASR 406          
BLAST of EY729029 vs. ExPASy Swiss-Prot
Match: PPOCM_SPIOL (Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.548e-45
Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 3
Query:  291 DALCKALGKDEVCLKSKVLSLSYSHDGKSALENWSLSS-SNQDKQSQGLSFDAVIMTASLCNVKEMKITKGGNLFPLDFLPEVIYMPLSVFITAFKKENVGKPLQGFGVLVPSKEQXNGLKTLGTLFSSMMFPDRAPKDXVLYTTLL 728
            D +CK  G+DE+ L+S+VLSLSYSH+G    ENWS+SS SN   Q Q   +DAV++TA + NVKE+KI K  N F LDF+PEV  +PLSV IT FKK NV +PL+GFGVLVPS EQ NGLKTLGTLFSSMMFPDRAP D  LYTT +
Sbjct:  277 DTICKEFGEDELKLQSEVLSLSYSHNGSLTSENWSVSSMSNSTIQDQ--PYDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVIITTFKKTNVKRPLEGFGVLVPSNEQHNGLKTLGTLFSSMMFPDRAPSDVYLYTTFV 421          
The following BLAST results are available for this feature:
BLAST of EY729029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPOM_TOBAC7.548e-4561.88Protoporphyrinogen oxidase, mitochondrial OS=Nicot... [more]
PPOCM_SPIOL7.548e-4564.63Protoporphyrinogen oxidase, chloroplastic/mitochon... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729029 ID=EY729029; Name=EY729029; organism=Citrus sinensis; type=EST; length=875bp
CACGCGTCCGGAAATAGTGGTTTCTTAATTCTTCTTATTGTTAGCCTGCA
CCTGTTCATTTTCTAATTCAAATTTATGTAGGCGTCTATGCTGATCACAT
CTATTCACTTGATGGCTATCATTTTGCATTTGTCAGCTCTAATCAGAATT
CTCTTTCTCCCTTTACATCCTAGCAAACATATCTTGAGTCAGATGTGTCC
TCTATACTGATAATCTCATTGATCTTTATTACTCTCTTAATATTATTTTT
TTTCACTTTCTTGTTTTTTGTTCTCTTGCAGACCCTCACTGATGCATTGT
GCAAAGCACTTGGCAAGGATGAGGTTTGTCTGAAATCAAAGGTTCTGTCA
TTATCTTATAGTCATGATGGGAAATCAGCATTAGAGAATTGGTCACTCTC
TAGTTCTAACCAAGACAAGCAATCACAAGGCCTATCTTTTGATGCTGTAA
TCATGACGGCTTCACTCTGCAATGTTAAAGAAATGAAGATTACGAAGGGA
GGAAATCTTTTTCCACTGGACTTTCTTCCTGAGGTGATTTACATGCCGCT
ATCAGTCTTCATCACCGCCTTTAAGAAAGAGAATGTCGGGAAGCCTCTTC
AAGGATTTGGAGTTCTTGTACCTTCTAAGGAGCAGNCAAATGGTTTAAAA
ACTCTTGGTACACTATTTTCCTCTATGATGTTTCCTGATCGAGCACCTAA
AGATNNTGTTCTCTATACAACTTTGTTGGANGAAGTCGCACAAAGAATGG
GCAAAGCTCAACGGATGAATTGAGCAGATGTTACTCTGACTGANGCATTG
CGGGAGTGAAAGGGAACCACNTTGTGATCATTCTCTGGATAAGCTTCCTT
GTATGGCGTACATACTCGGTAACAT
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