EY729001

Overview
NameEY729001
Unique NameEY729001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY729001 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 93/121 (76.86%), Postives = 111/121 (91.74%), Query Frame = 3 
Query:  417 DVPLISLVALCKSPYMLFKGWHRLFHDLIXREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTNIFLGAYAGVVVYXESSLWFGLRYIIAALSIYDEYXHDILDMPEGSCFPRPHYRKR 779
            D P+ISLVA+CKSPYMLFKGWHRLFHDLI REGPFLET+CVP+AGLAI+LWPLAV GAV+GS++++IFLGAYAGVV Y ESS ++GL YI+A++SIYDEY  DILD+PEGSCFPRP YR++
Sbjct:  195 DPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRK 315

HSP 2 Score: 83.1889 bits (204), Expect = 2.191e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   13 YDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIR 153
            YDGTWST++ SFT+VRDFKDVCFHSYFSLMD+L+Q   PD KYYEIR
Sbjct:  132 YDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQ-SCPDRKYYEIR 177
The following BLAST results are available for this feature:
BLAST of EY729001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH1.706e-5276.86Uncharacterized membrane protein At3g27390 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-C12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729001 ID=EY729001; Name=EY729001; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGTTTACGATGGGACTTGGAGCACGATTAAACACAGCTTCAC
TATTGTCAGAGATTTTAAAGATGTCTGTTTCCATTCCTACTTTTCACTTA
TGGATGATCTGCGACAGAAACAGGCTCCAGATGGAAAATATTATGAAATA
AGGTGTGCTGTTTGCTTTTGCTGCTAAGAAATTCCTTTTTTAAGTCCATG
TTGCTGCTATTATCCAATTCACGACAATCACTAGGACATCACTCGGTATA
ATTTTTAGTTAACAGTGAGAATTAACCATCAAATCTGTTCATTTAGTACT
TGTTATCCACTTTTGAATATCTCTTTTGCCTTTTAGATTGCCCTTTTCAT
TGACCGTGTTTCAGATTGCTCTATATTCCTGGTGCCATCATTGCTGGGGG
GCTTGGTGTCCTCATTGATGTGCCACTGATCTCACTTGTTGCCCTATGCA
AAAGCCCTTATATGCTCTTTAAGGGGTGGCATCGTTTGTTTCATGACCTT
ATANGCCGAGAAGGTCCTTTCTTAGAGACTATATGCGTACCATTAGCTGG
CCTTGCTATCATACTCTGGCCATTGGCTGTTGTTGGGGCAGTTTTGGGCT
CCATGGTGACCAATATCTTCCTTGGTGCTTATGCAGGGGTGGTTGTTTAT
CANGAATCCTCCCTTTGGTTCGGGCTTCGCTATATTATTGCAGCCTTGTC
CATTTATGATGAATACAGNCATGACATACTTGACATGCCAGAAGGATCCT
GCTTTCCTAGGCCCCACTATCGAAAGAGGCAAACTCTCGCGGACAGTACT
TCTCAAGGCTACTCTTTCAAGATCTCCCTCTCCACAGNTCCTTTAGAAGC
ATTGATTGAACACTGACTCTGAGCCTTTAATGGTTC
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