EY728989

Overview
NameEY728989
Unique NameEY728989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728989_ssr241 microsatellite EY728989_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = -3
Query:   44 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKF 367
            F+V N A+  R K  MV+NYK +N  T  D Y + NK++L+  I+ + I S F+C+ GFWQ  +D +    T F+ P+G ++  V+   LK  P IFQ+ MD+  R + KF
Sbjct:  287 FLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKF 397          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = -3
Query:   44 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKF 367
            F+V N A+  R K  MV+NYK +N  T  D Y + NK++L+  I+ + I S F+C+ GFWQ  +D +    T F+ P+G ++  V+   LK  P IFQ+ MD+  R + KF
Sbjct:  287 FLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKF 397          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = -3
Query:   44 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKF 367
            F+V N A+  R K  MV+NYK +N  T  D Y + NK++L+  I+ + I S F+C+ GFWQ  +D +    T F+ P+G ++  V+   LK  P IFQ+ MD+  R + KF
Sbjct:  287 FLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKF 397          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = -3
Query:   44 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKF 367
            F+V N A+  R    MV+NYK +N  T  D Y + NK++L+  I+ + I S F+C+ GFWQ  +D +    T F+ P+G ++  V+   LK  P IFQ+ MD+  R + KF
Sbjct:  288 FLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKF 398          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.990e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:   44 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKF 367
            F+V N A+  R K  MV+NYK +N  T  D Y   NK++L+  I+ + I S F+C+ GFWQ  +D +    T F+ P+G ++  V+   LK  P IFQ+ MD+  R + KF
Sbjct:  282 FLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKF 392          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_RTBVP (Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = -3
Query:   68 KHLKETIVHK-------TCKNLTLR*HNN*N*EFIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQ 445
            K +KE + +K       TC++ T          FIVRNH++   +K  +V NYKRLNDN + D + I +K  +IN IQ  NI SKF+ + GF   K+ DD+   TTF+  EGL+   V    + N P  FQ+ M +
Sbjct: 1201 KQIKELLDNKLIKKADPTCRHRTAA--------FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQE 1328          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = -3
Query:   41 DPIKYWNRNKFKAHL-----DIRMYISLLKHLKETIVHKTCKNLTLR*H---------NN*N*EFIVRNHAKIN-------RRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKFV 517
            +P+++W  NK K  L     DI++    +KH+         + + L             + +  FIVR+  +I+       + K  MV NYK LN+NT  D Y +   N +I+ +    I SKF+ + GFWQ  M+++ +  T F     L++ +V+   LKN P IFQ+KMD + +   KF+
Sbjct: 1379 NPMEFWKNNKIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFI 1561          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = -3
Query:   38 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIFQQKMDQILRKYGKFVL 367
            F+V N A+  R K  MV+NYK +N  T  D + + N  +L+  ++ ++I S F+C+ GFWQ  +D++    T F+ P+G F+  V+   LK  P IFQ+ M   L    KF +
Sbjct:  280 FLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCM 392          
BLAST of EY728989 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = -3
Query:   86 FIVRNHAKINRRKV*MVINYKRLNDNTYED*YKILNKNQLINCIQNENISSKFNCRLGFWQAKMDDDYILSTTFSYPEGLFK*IVI---LKNIPFIF 367
            F+V N A+  R K  MV+NYK +N  T  D + + NK++L+  ++ + I S F+C+ G WQ  +D +  L T F+ P+G ++  V+   LK  P IF
Sbjct:  269 FLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIF 365          
The following BLAST results are available for this feature:
BLAST of EY728989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
POL_CAMVS1.313e-1539.64Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVE1.313e-1539.64Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC1.313e-1539.64Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVN4.990e-1538.74Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD4.990e-1539.64Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_RTBVP9.411e-1438.24Polyprotein P3 OS=Rice tungro bacilliform virus (i... [more]
POL_COYMV9.411e-1430.05Putative polyprotein OS=Commelina yellow mottle vi... [more]
POL_FMVD2.096e-1336.28Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]
POL_CERV4.371e-1137.11Enzymatic polyprotein OS=Carnation etched ring vir... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-B09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728989 ID=EY728989; Name=EY728989; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCTAAAACAAATTTA
CCATATTTTCTAAGTATTTGATCCATCTTTTGTTGAAAGATAAAAGGGAT
ATTTTTTAGTATAACAATCTATTTGAAAAGTCCCTCAGGATAGCTGAAGG
TAGTCGATAGAATATAATCATCATCCATTTTAGCTTGCCAAAATCCTAAT
CTACAATTAAACTTGCTGGATATATTTTCATTTTGGATGCAATTAATTAA
TTGATTTTTATTAAGGATTTTATACTAGTCTTCATATGTATTATCATTTA
AACGTTTATAATTTATGACCATTCACACTTTTCTTCTATTAATTTTTGCA
TGGTTTCTAACAATAAACTCCTAATTTTAATTATTATGTTATCTTAATGT
TAAATTCTTACATGTCTTGTGAACTATAGTCTCCTTTAGATGTTTTAATA
GTGAAATATACATTCTTATATCTAAATGGGCTTTAAATTTGTTTCTATTC
CAATATTTGATTGGGTCTCCTTCGGATGTGTAATTTCTGTTAATCTAATT
ATTTCTTCTAAGTCATTTTTTGTAGATTTTGTAATTTAGGCTTTTTGGTC
TGTACATCTATAATGTTTAGTATGACGATAAGATCCTAGGAGTTTTCAGA
TTCTAAATCACCATAACTTATGTCTTATGATATATGGCCCCTCATCTCGC
CGCCGGAAGCACAAAAAAAAAAAGGGGCGGCTCGTCCAAGAGGATCCAAC
GTTACTTGGCGCGCGTGGGGAGGCCTAACCCCTCTGTTGGGTGCCCCNAC
TGCACTAGCGGGCCCTCGGTTCAACCCTCCTGCTGCGAAAGCCCGGGCTC
CCCCTCGTAGGGCCGTTGCGGCTCCCCCTCTCCGCCCGGGGCTGTGGAGT
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