EY728983

Overview
NameEY728983
Unique NameEY728983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4788 contig Csv1_Contig4788:477..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728983 vs. ExPASy Swiss-Prot
Match: TIG_TRIEI (Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.008e-14
Identity = 37/137 (27.01%), Postives = 65/137 (47.45%), Query Frame = 1
Query:   52 TKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDIXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDE-SHVQNIPHAETKGFHFDTEDGDKVLPGFLDSISGIQRGET 459
            T+F E+ K++     +++   VDV PE K     G+     +V+ +            L  R   +G+L  +  R  ++GD+AIVD       E E    Q +P  + + F  D ++G + +PGF++ I G++  ET
Sbjct:   95 TEFEELVKDFEPGKEMAFSAKVDVEPEAKVEDYKGF-----LVQAEEAKYDSALVDEFLEERRSRMGTLIPIEGRAAEMGDVAIVDFVGIIPSETEGEEAQEVPGGKAQDFQMDLKEG-QFIPGFIEGIVGMKLQET 225          

HSP 2 Score: 38.1206 bits (87), Expect = 8.008e-14
Identity = 26/76 (34.21%), Postives = 39/76 (51.32%), Query Frame = 3
Query:  459 KSFRLAFPESWRREHLRGVQAQFTVECRELFYRGLPTLDDSLAGRLLPGCTTIEQVKETLLQK-CREVEQTGKDER 683
            K     FP  +   +L G    FTV  +EL  + LP LDD LA + +    TI++++E L QK  +E E+  K  +
Sbjct:  226 KEISAQFPSEYSEANLAGKPVVFTVTLKELKEKELPELDDDLA-QEISEFETIDKLREFLEQKFTKEKEEKTKQNK 300          
BLAST of EY728983 vs. ExPASy Swiss-Prot
Match: TIG_SYNP2 (Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.354e-13
Identity = 41/143 (28.67%), Postives = 62/143 (43.36%), Query Frame = 1
Query:   43 RIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDIXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTI-DEDESHVQNIPHAETKGFHFDTEDGDKVLPGFLDSISGIQRGETSPF 468
            ++ + F ++   Y    + S+   VDV   V  N    YK L    E              L ++ + L +L  V DR  Q+GD+AI D     + D  E     IP  + + F  D E+G K +PGF+D   G++  ET  F
Sbjct:   92 QLKSSFDDLISAYKPGEASSFKAAVDVPATVTLN---SYKGLSFKAEKSE--YDPADLDEFLTQKQRELATLVPVEDRAAQMGDVAIADYEGRYVNDAGEEEEDIIPGTQAEDFSLDLEEG-KFIPGFVDGFVGMKPEETKKF 228          

HSP 2 Score: 41.5874 bits (96), Expect = 1.354e-13
Identity = 20/43 (46.51%), Postives = 24/43 (55.81%), Query Frame = 3
Query:  459 KSFRLAFPESWRREHLRGVQAQFTVECRELFYRGLPTLDDSLA 587
            K F + FPE +  E + G Q  FTV  +EL  R LP LDD  A
Sbjct:  226 KKFTVTFPEDYGNEEMAGKQVSFTVTLKELKSRELPELDDEFA 268          
BLAST of EY728983 vs. ExPASy Swiss-Prot
Match: TIG_PROMM (Trigger factor OS=Prochlorococcus marinus (strain MIT 9313) GN=tig PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.232e-11
Identity = 37/140 (26.43%), Postives = 61/140 (43.57%), Query Frame = 1
Query:   58 FSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDIXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESHVQNIPHAETKGFHFDTEDGDKVLPGFLDSISGIQRGETSPFDSH 477
            F  + +++    +L+  +  DV P  K     G +    VV  D            + +  K L +L  V  R   +GDIA+V  S T  D+D S ++      +     D EDG +++PGF++ I G+  G+    D H
Sbjct:  102 FDALLESFQPSEALTLTLETDVTPTPKLKATKGLQAEAEVVTFDPS-----KVDELIEQSRKQLATLVPVESRPAAIGDIAVVSFSGT-YDDDGSAIEG---GSSDSMDVDLEDG-QMIPGFVEGIIGMNLGDEKTVDCH 231          

HSP 2 Score: 40.4318 bits (93), Expect = 4.232e-11
Identity = 22/67 (32.84%), Postives = 38/67 (56.72%), Query Frame = 3
Query:  456 DKSFRLAFPESWRREHLRGVQAQFTVECRELFYRGLPTLDDSLAGRLLPGCTTIEQVKETLLQKCRE 656
            +K+    FP+ + +E  RG +A F +  +EL  R LP LDD+ A +      T+E+++  L Q+ +E
Sbjct:  225 EKTVDCHFPDDYSKEDARGRKASFVINLKELKTRELPDLDDAFA-QQSSDKATLEELRNDLEQRLQE 290          
BLAST of EY728983 vs. ExPASy Swiss-Prot
Match: TIG_SYNP6 (Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 9.256e-11
Identity = 33/144 (22.92%), Postives = 58/144 (40.28%), Query Frame = 1
Query:   43 RIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDIXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESHVQNIPHAETKGFHFDTEDGDKVLPGFLDSISGIQRGETSPFDS 474
            ++ + F  +   +    S S++  VDV P        G     + VE+             L  + K + +L  V  R   +GD+A++D     ++  E     IP      F  + E+ D+ +PGF+  I G+   ET   D+
Sbjct:   94 QLSSDFETLVAAFQPGKSFSFEASVDVQPTATLAQYTG-----LTVEVAEVPFDANRVDNVLAEQQKQMATLVPVEGRNAAIGDVAVIDFQGILVESGE----EIPGGSGTDFQIEVEE-DRFIPGFISGIVGMAIEETRTVDA 227          

HSP 2 Score: 42.3578 bits (98), Expect = 9.256e-11
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  477 FPESWRREHLRGVQAQFTVECRELFYRGLPTLDDSLAGRLLPGCTTIEQVKETLLQK 647
            FPE++ +E + G  AQFT+  +EL  R LP LDD+ A +      TIE++K  L ++
Sbjct:  229 FPETYAQEEVAGKAAQFTITLKELKTRDLPELDDAFA-QEASQYETIEELKTALTER 284          
BLAST of EY728983 vs. ExPASy Swiss-Prot
Match: TIG_SYNE7 (Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 9.256e-11
Identity = 33/144 (22.92%), Postives = 58/144 (40.28%), Query Frame = 1
Query:   43 RIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDIXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESHVQNIPHAETKGFHFDTEDGDKVLPGFLDSISGIQRGETSPFDS 474
            ++ + F  +   +    S S++  VDV P        G     + VE+             L  + K + +L  V  R   +GD+A++D     ++  E     IP      F  + E+ D+ +PGF+  I G+   ET   D+
Sbjct:   94 QLSSDFETLVAAFQPGESFSFEASVDVQPTATLAQYTG-----LTVEVAEVPFDANRVDNVLAEQQKQMATLVPVEGRNAAIGDVAVIDFQGILVESGE----EIPGGSGTDFQIEVEE-DRFIPGFISGIVGMAIEETRTVDA 227          

HSP 2 Score: 42.3578 bits (98), Expect = 9.256e-11
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  477 FPESWRREHLRGVQAQFTVECRELFYRGLPTLDDSLAGRLLPGCTTIEQVKETLLQK 647
            FPE++ +E + G  AQFT+  +EL  R LP LDD+ A +      TIE++K  L ++
Sbjct:  229 FPETYAQEEVAGKAAQFTITLKELKTRDLPELDDAFA-QEASQYETIEELKTALTER 284          
The following BLAST results are available for this feature:
BLAST of EY728983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TIG_TRIEI8.008e-1427.01Trigger factor OS=Trichodesmium erythraeum (strain... [more]
TIG_SYNP21.354e-1328.67Trigger factor OS=Synechococcus sp. (strain ATCC 2... [more]
TIG_PROMM4.232e-1126.43Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_SYNP69.256e-1122.92Trigger factor OS=Synechococcus sp. (strain ATCC 2... [more]
TIG_SYNE79.256e-1122.92Trigger factor OS=Synechococcus elongatus (strain ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728983 ID=EY728983; Name=EY728983; organism=Citrus sinensis; type=EST; length=765bp
CACGCGTCCGCCCACGCGTCCGGGGCTTTGAGAGACTCCGTCCGCATTGT
GACTAAGTTTTCTGAAATGGAGAAGAACTATTCTTCTCTCAACTCTCTCA
GTTATGATGTGCTTGTCGATGTTGCGCCTGAAGTCAAATGGAATCCTGGA
AATGGATACAAGAATTTGAAGATTGTTGTAGAAATAGATAATGACATAGC
TGCTCAACAAGCTGCTGAAGAAGAATTAAGACGTCGCCATAAGTCCCTTG
GATCACTGAAAATTGTCACTGACAGAGGACTACAGGTCGGTGACATTGCA
ATCGTTGATATATCAGCAACAACAATAGATGAAGATGAATCACATGTTCA
AAATATTCCACATGCAGAGACCAAAGGATTTCATTTTGATACAGAAGATG
GGGACAAAGTTCTTCCAGGTTTTCTTGATTCTATAAGTGGAATTCAGCGA
GGTGAGACAAGTCCTTTCGACTCGCATTCCCTGAATCCTGGAGACGAGAA
CATCTTCGTGGTGTTCAAGCTCAATTTACTGTTGAATGCAGAGAACTGTT
TTATAGAGGATTGCCGACATTGGATGACTCCCTTGCTGGAAGGCTTCTTC
CCGGATGCACTACCATAGAGCAGGTCAAGGAAACATTATTGCAGAAGTGT
CGAGAAGTGGAGCAAACTGGCAAAGACGAGCGACTGATAATGCAACGCTA
GAACGACCTTACGAGATGGGGGAGATGGAGTTTCCTCAGCCCTGTTTGGG
GAACAAGGAGGCAGC
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