EY728944

Overview
NameEY728944
Unique NameEY728944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728944 vs. ExPASy Swiss-Prot
Match: CYDB_ECOLI (Cytochrome d ubiquinol oxidase subunit 2 OS=Escherichia coli (strain K12) GN=cydB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.263e-14
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = -2
Query:    5 LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIP-GKTDRDVMMNTVAPVWDGNETWXXXXXXXXXXXXXXAYSVVXXXXXXXXXXXXXXLIFRGVAFEFRFKAKDDK-RHLWDKAFIGGSLAATFFQGVALGAFIDGIP 418
            L  IW +++   ++ + V DGFD+G+G+L  F+    T+R +M+N++AP WDGN+ W               Y+                L FR V F++R K ++ + R++WD     GS       GVA G  + G+P
Sbjct:    7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVP 146          
BLAST of EY728944 vs. ExPASy Swiss-Prot
Match: CYDB_ECOL6 (Cytochrome d ubiquinol oxidase subunit 2 OS=Escherichia coli O6 GN=cydB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.263e-14
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = -2
Query:    5 LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIP-GKTDRDVMMNTVAPVWDGNETWXXXXXXXXXXXXXXAYSVVXXXXXXXXXXXXXXLIFRGVAFEFRFKAKDDK-RHLWDKAFIGGSLAATFFQGVALGAFIDGIP 418
            L  IW +++   ++ + V DGFD+G+G+L  F+    T+R +M+N++AP WDGN+ W               Y+                L FR V F++R K ++ + R++WD     GS       GVA G  + G+P
Sbjct:    7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVP 146          
BLAST of EY728944 vs. ExPASy Swiss-Prot
Match: CYDB_ECO57 (Cytochrome d ubiquinol oxidase subunit 2 OS=Escherichia coli O157:H7 GN=cydB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.263e-14
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = -2
Query:    5 LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIP-GKTDRDVMMNTVAPVWDGNETWXXXXXXXXXXXXXXAYSVVXXXXXXXXXXXXXXLIFRGVAFEFRFKAKDDK-RHLWDKAFIGGSLAATFFQGVALGAFIDGIP 418
            L  IW +++   ++ + V DGFD+G+G+L  F+    T+R +M+N++AP WDGN+ W               Y+                L FR V F++R K ++ + R++WD     GS       GVA G  + G+P
Sbjct:    7 LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVP 146          
BLAST of EY728944 vs. ExPASy Swiss-Prot
Match: CYOB_HAEIN (Probable cytochrome oxidase subunit 2 OS=Haemophilus influenzae GN=HI1075 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.404e-13
Identity = 44/140 (31.43%), Postives = 63/140 (45.00%), Query Frame = -2
Query:    5 LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGK-TDRDVMMNTVAPVWDGNETWXXXXXXXXXXXXXXAYSVVXXXXXXXXXXXXXXLIFRGVAFEFRFKAKDDK-RHLWDKAFIGGSLAATFFQGVALGAFIDGIP 418
            L  IW V++I  ++ + V DGFD+G+  L P I  K  +R +M+NT+AP WDGN+ W               Y+V               L  R + FE+R K  +   R +WD     G        GVA G  + G+P
Sbjct:    7 LRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWDWGLFAGGFVPALVFGVAFGNLLQGVP 146          
BLAST of EY728944 vs. ExPASy Swiss-Prot
Match: APPB_ECOLI (Cytochrome bd-II oxidase subunit 2 OS=Escherichia coli (strain K12) GN=appB PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 41/140 (29.29%), Postives = 67/140 (47.86%), Query Frame = -2
Query:    5 LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTD-RDVMMNTVAPVWDGNETWXXXXXXXXXXXXXXAYSVVXXXXXXXXXXXXXXLIFRGVAFEFRFKAKDDK-RHLWDKAFIGGSLAATFFQGVALGAFIDGIP 418
            L  IW ++I   ++++++ DGFD+GIG L P +    D R +++N+V   W+GN+ W               Y+                L FR +AF++R K  D + R +WD   + GSL      G+A G  + G+P
Sbjct:    7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146          
The following BLAST results are available for this feature:
BLAST of EY728944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYDB_ECOLI8.263e-1430.00Cytochrome d ubiquinol oxidase subunit 2 OS=Escher... [more]
CYDB_ECOL68.263e-1430.00Cytochrome d ubiquinol oxidase subunit 2 OS=Escher... [more]
CYDB_ECO578.263e-1430.00Cytochrome d ubiquinol oxidase subunit 2 OS=Escher... [more]
CYOB_HAEIN2.404e-1331.43Probable cytochrome oxidase subunit 2 OS=Haemophil... [more]
APPB_ECOLI9.136e-1329.29Cytochrome bd-II oxidase subunit 2 OS=Escherichia ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-F04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728944 ID=EY728944; Name=EY728944; organism=Citrus sinensis; type=EST; length=827bp
CACCGGGGATGCCATCGATGAACGCCCCCAGCGCTACGCCCTGGAAGAAC
GTCGCCGCCAGCGAGCCGCCGATGAAGGCCTTGTCCCACAAGTGACGCTT
GTCGTCCTTGGCCTTGAAGCGAAATTCAAACGCCACGCCGCGAAAGATCA
GCCCGATCAGCATCAGCATCAGTGGCAGGTACAGCGCCGAGAGCACCACC
GAATAGGCCAGCGGGAACGCGCCAAACAACGCCGCGCCGCCGAGTACCAG
CCAGGTTTCGTTGCCGTCCCACACGGGGGCGACGGTGTTCATCATCACGT
CACGGTCGGTCTTGCCCGGGATGAACGGGAAGAGAATGCCGATCCCCAGG
TCAAAGCCGTCCATGACCACGTACATCATGATGCCGAAGATGATGATCAC
GGCCCAGATCAGCGGAAGATCAATACCCATGGCTCAGTTCCCCTTGTTCA
AGGTGTCGCCGTGATCGGCATCGGCACTGTCATCAGCCGCCGACAACGGA
CGGGCCGGTGTGCGTNTCTGCCCAGGGCCACCGTGAGTAGGCTCGGTGCT
TTCGTGGGTCACAGGCCCTTTGCGCCCAGGCGCATCATGTAGTCCAGCCC
GCGCGAACGAGCGAGTCGACTAACCAACACACCAAGTACTGTGTATGCTC
ATCTGCGCAAGCTGTGGTTGGGAGACGCGTCCAACAGCGCGTTAGCCAGT
AAACCAACACGGTGTTGGGCGCCATGTGGGGTGAAACACTGGNNNNGATA
TGNATTTNACNNNAGGGGCGTCCCCCCCCCCCGCCAANAAAAAGGGGGGG
TGGATTTTTTTTTTTTTTCCCCCNCCC
back to top