EY728929
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21 Identity = 46/112 (41.07%), Postives = 76/112 (67.86%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 575 GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP ++ LL+MD++L + E V++ A + + V + V+ ++ ++ G Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEASVSLG 244
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3) HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21 Identity = 46/106 (43.40%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 557 GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP ++ LL+MDA+L + E V++ A + + V + V+ ++ ++ Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20 Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 557 GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP ++ LL+MDA+L + E V++ A + V + V+ ++ ++ Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRFU (Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19 Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAGIPMRD+V +CSAG + +LDLN ED+ G DV V I+P + +TLLQMD L F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEON (Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19 Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G DV V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAB (Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19 Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G DV V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRHO (Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.529e-19 Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G DV V I+P + +TLLQMD L F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEGJ (Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19 Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +LDLN ED+ G DV V I+P + +TLLQMD L F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRKO (Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545 GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +LDLN ED+ G DV V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E Sbjct: 135 GTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKE 236
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_NITMS (Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0432 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18 Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539 GTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V ++ L Sbjct: 135 GTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234 The following BLAST results are available for this feature:
BLAST of EY728929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728929 ID=EY728929; Name=EY728929; organism=Citrus sinensis; type=EST; length=895bpback to top |