EY728929

Overview
NameEY728929
Unique NameEY728929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728929_ssr89 microsatellite EY728929_ssr89:89..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21
Identity = 46/112 (41.07%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 575
            GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP   ++ LL+MD++L  +  E V++ A +  + V   +  V+ ++ ++     G
Sbjct:  133 GTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEASVSLG 244          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 7.861e-21
Identity = 46/106 (43.40%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 557
            GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP   ++ LL+MDA+L  +  E V++ A +  + V   +  V+ ++ ++
Sbjct:  133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 557
            GT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP + + +LP   ++ LL+MDA+L  +  E V++ A    + V   +  V+ ++ ++
Sbjct:  133 GTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRFU (Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus GN=PF1568 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.135e-19
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAGIPMRD+V +CSAG +    +LDLN  ED+ G  DV V I+P  + +TLLQMD  L    F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEON (Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P  + +TLLQMD  L  + F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAB (Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi GN=PYRAB06100 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.936e-19
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P  + +TLLQMD  L  + F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRHO (Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii GN=PH1549 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.529e-19
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAGIPMRD+V +C+AG +    +LDLN  ED+ G  DV V I+P  + +TLLQMD  L    F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_THEGJ (Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAG+PMRD+V +C+AG ++   +LDLN  ED+ G  DV V I+P  + +TLLQMD  L    F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_PYRKO (Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 545
            GTR A I AA+LAL DAGIPM+D+V +C+AG ++   +LDLN  ED+ G  DV V I+P  + +TLLQMD  L  + F + ++LAI+G KAV    RE L E
Sbjct:  135 GTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKE 236          
BLAST of EY728929 vs. ExPASy Swiss-Prot
Match: ECX1_NITMS (Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0432 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.141e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  240 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 539
            GTR A + AA++AL DAGIPMRD+V + +AG +  T +LD+N  ED AG  D+ +G +P L+K+TLLQ+D  L    ++  +Q+ ++GCK V    ++ L
Sbjct:  135 GTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234          
The following BLAST results are available for this feature:
BLAST of EY728929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
EXOS4_MOUSE7.861e-2141.07Exosome complex exonuclease RRP41 OS=Mus musculus ... [more]
EXOS4_HUMAN7.861e-2143.40Exosome complex exonuclease RRP41 OS=Homo sapiens ... [more]
EXOS4_BOVIN1.341e-2043.40Exosome complex exonuclease RRP41 OS=Bos taurus GN... [more]
ECX1_PYRFU1.135e-1952.94Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_THEON1.936e-1951.96Probable exosome complex exonuclease 1 OS=Thermoco... [more]
ECX1_PYRAB1.936e-1951.96Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_PYRHO2.529e-1951.96Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_THEGJ3.303e-1950.98Probable exosome complex exonuclease 1 OS=Thermoco... [more]
ECX1_PYRKO3.303e-1950.98Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_NITMS2.141e-1844.00Probable exosome complex exonuclease 1 OS=Nitrosop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728929 ID=EY728929; Name=EY728929; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGAGCAGATGGAGGTAGCTTATATTTCAATCATAAGTCCCT
ATTGATGATCCCCTAGACGACAAGAACCTCTTATATTATCTCTCTCTCAT
CCTCTGATTCTGTGTGTTTGCTTGACAGTGCATTTGTATACTTCCCTTTT
CTTTTTCCTTTTTTTCTGCCACGACATTGAGTAGTTCATCTTCTGAAATA
GGAAATGTCTCTTGCTGATTTTGTAATGTGTGGTCAACAGGGACAAGATC
CGCATGTATTAATGCCGCAACATTAGCCCTTCAAGATGCTGGTATTCCAA
TGCGCGATATTGTTACTTCATGTAGTGCTGGATACCTCAATAGCACTCCT
CTTCTTGATTTGAATTATGTTGAAGATAGTGCTGGAGGCCCTGATGTCAC
TGTAGGTATTTTACCTACATTGGACAAAGTTACTCTTCTTCAGATGGATG
CCAAGTTACCCACAAATACCTTTGAAGATGTCATGCAACTTGCAATTGAA
GGCTGTAAGGCAGTGGCAAATTACATTCGAGAAGTATTGCTAGAGAATAC
CAAGCAGTTGGAATGCCGCCGGGGTTTATGATAGATAGTCATGGCAAGGT
AGTTGTTCTTTGACTGTTGCCTGACTGGTGTNGTTTGCCCTGNTCATTTT
CTGACTTTGAATTGTACCATCTTTCACATGGAAATGTGAGATCATACAGG
GATTACTGAATGGNCANTGTTACTCAAATCCAACCTGGTCTCTTNAAGCA
TGGTTTGCTTATTCCCAATTTGTTGTGGAAAATTTTATTACACAGATTAT
CCCTTGGGTGTATTGGTCTGGCTACTATTAATTTTGTATGGAGCTCCTGA
AAGCATTACTAATACCTAAGAAAATCTGGTTTCCCATTTCCATTG
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