EY728814

Overview
NameEY728814
Unique NameEY728814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728814 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.023e-46
Identity = 97/172 (56.40%), Postives = 119/172 (69.19%), Query Frame = 1
Query:   70 PLSID*VSTATKGNHFGLSGNKSLAAVSXNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNTCRLFGIQLVDNSNVEKASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPHESQSRQIQSCTKVHMQGIAVGRAVDLTRLGCYEELSQKL 585
            P S+   S   K   FG  GNKS   VS  S +WP  A++  ESFA   N E +EK+Q NGN CRLFG +LV+N NV++   A ++SGA+  D+ +P  + DS Q SEP NIN+SD+PS S D EKS LRSP ESQSRQI+SCTKVHMQG AVGRA+DLTR  CYE+L +KL
Sbjct:  403 PSSVPLFSPPAKAATFGHGGNKSFG-VSIGSAFWPTNADSAAESFASAFNNESTEKKQTNGNVCRLFGFELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKL 573          
BLAST of EY728814 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.389e-27
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  118 GLSGNKSLAAVSXNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEKASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPHESQSRQIQSCTKVHMQGIAVGRAVDLTRLGCYEELSQKL 585
            G S     +A+S    YWP R E    S++  ++K  SEK+Q   +  CRLFGI++  +S VE  SP   +SG +G D+    +DA+SDQ S+PS+ N+SD P+ S +       SPHE+QSRQ++SCTKV MQG+AVGRAVDLTRL  Y++L  KL
Sbjct:  433 GFSTKNEPSALSNKHFYWPMR-ETRANSYSASISKVPSEKKQEPSSAGCRLFGIEI--SSAVEATSPLAAVSG-VGQDQPAASVDAESDQLSQPSHANKSDAPAASSEP------SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKL 579          
BLAST of EY728814 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.279e-27
Identity = 74/153 (48.37%), Postives = 101/153 (66.01%), Query Frame = 1
Query:  130 NKSLAAVSXNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEKASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPHESQSRQIQSCTKVHMQGIAVGRAVDLTRLGCYEELSQKL 585
            +K+  ++  N  YW  R ++ T+SF+   NK   E++Q      CRLFGI++  +S VE+A PA T+SG +G D+ +  +D DSDQ S+PSN N+SD P  S +      RSP ESQSRQ++SCTKV MQG+AVGRAVDLT+L  Y +L  KL
Sbjct:  436 SKNEPSILSNQFYWSMR-DSKTDSFSASTNKTRVERKQEPTTMGCRLFGIEI--SSAVEEALPAATVSG-VGYDQTVLSVDVDSDQISQPSNGNKSDAPGTSSE------RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKL 578          
The following BLAST results are available for this feature:
BLAST of EY728814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARFA_ARATH1.023e-4656.40Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ1.389e-2747.13Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFI_ORYSJ5.279e-2748.37Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728814 ID=EY728814; Name=EY728814; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGGGAAATCTCACGTTGAATCTTCAGCTTTCTCATACTGTG
ACTCACCGCAAGGACGCGACCTCTATCCATCGACTAAGTTTCCACTGCCA
CGAAGGGCAACCATTTTGGGTTGAGTGGAAATAAGTCACTGGCTGCTGTT
TCCANCAACTCAATGTACTGGCCCAACCGTGCAGAAAATGTTACAGAATC
ATTTGCTCCAGTTGTGAACAAGGAATGCAGTGAAAAGAGACAGGGCAATG
GGAACACCTGCAGGCTATTTGGCATTCAGCTCGTTGACAACTCGAATGTA
GAAAAAGCTTCACCTGCTTTTACCATGTCTGGAGCAATGGGGGATGATCG
AGCAATTCCATGTTTAGATGCAGACTCTGACCAGCATTCTGAACCATCAA
ATATTAATCGATCTGACGTTCCTTCTGTAAGTTGTGATGCAGAGAAATCG
TGCCTGAGATCTCCTCACGAGTCTCAAAGCAGGCAGATTCAAAGTTGCAC
AAAGGTTCATATGCAAGGAATCGCAGTTGGGAGGGCTGTTGATTTGACGC
GACTTGGATGTTATGAAGAGCTATCTCAGAAACTTGGAGGACATGTGTTA
GCTTGATGGAGACGTTCGTGTCTCCTCCGACAATCGGGCGTCGCGCCCGC
GACGTTTGTGAGACACACGTGCCGACCGGCGGAGACAAACACGATGTGGT
TCTTTGTCAGTAATGAGTACACAGGCCCCAGAGCCTACAGTGTCGGTCAA
CCGGTCTACGTGTGATGATCGGGAGCGCGACTGACAGTGTGAGGCGAATC
TGAGTGGGCGACGCGAGAGGGGCGGGCGGCGGGTCTTGTCGGTGGCGCTG
TGGGCTGG
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