EY728639

Overview
NameEY728639
Unique NameEY728639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728639 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.559e-18
Identity = 58/145 (40.00%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  248 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKNFVYESPHKLYVGHLSWAGKPEDLRNHF 664
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV +LSWA   + LR+ F
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAF 237          
BLAST of EY728639 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  239 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKNFVYESPHKLYVGHLSW 631
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVG++ W
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPW 239          
BLAST of EY728639 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  248 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKNFVYESPHKLYVGHLSWAGKPEDLRNHF 664
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVG+L+W    + L   F
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLF 208          
The following BLAST results are available for this feature:
BLAST of EY728639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ROC5_NICSY4.559e-1840.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY4.133e-1132.0631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY5.397e-1131.6529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-E09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728639 ID=EY728639; Name=EY728639; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGGGCTTCTTAACAACTTCTTCCTCTCTGTTCACAAAAATTA
CTCCTCCAGCTACACCAAAACGATTCGGTTTTACCTCTCTGCCAACTTTA
ATTAATTTCCAGTACCCAAAGCTCTCATCTTGCTGGTCCCGCTCTCACCC
AGCTGGGTTTCGCTCAGTTCTTGCGGTGGTAGATGAGGAAGCGGTAGTAG
TTGAAGATGAGATTAACGGCAAGGATAATGTTGGTGGAAACGAAGTGGAC
GACGACAGTTCAGTCGAAGAGCCAAGGAGCCGCGCAAGGCCCTGTGAGTT
ATACGTGTGTAACTTGCCCAGGAGCTTTGACATTTCAGAGCTTCTTGAGA
TGTTCAAGCCTTTTGGAACCGTTCTTTCCGTTGAGGTTTCGAGGAATCCC
GAAACAGGCATAAGTCGTGGATGCGGTTACCTGACAATGGGTTCGATCAA
TTCAGCAAAAAATGCAATTATTGCATTGGACGGATCTGATGTGGGTGGAC
GTGAAATGCGGGTGAGATTTTCAATTGATATGAATTCGCGGACTAGGAAT
GCTGAGGCATTGATTTCACCACCAAAGAAGAATTTTGTCTATGAAAGCCC
TCATAAATTATATGTTGGNCATCTTTCCTGGGCTGGTAAACCTGAGGATT
TGAGAAATCATTTTGGCCCGGTTTGGGACTGTGGTCAGTGCTAAAGTGTG
GCACAATCTTAAGGAACAACACCCGAGTTTTGGGGTTATTTCTTCTCTTC
TTGAGCAGAACGGAAGCGGACTTTCTTTAAATGGAGAAAATTTCGGGTCG
CGACAAAATTGTTAACAAGGTGTGACAGAACGAGCTCTGATAGGCTCCGA
GCGGCCGGGTTCCAGGGAA
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