EY728528

Overview
NameEY728528
Unique NameEY728528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728528 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 9.935e-35
Identity = 87/181 (48.07%), Postives = 106/181 (58.56%), Query Frame = 3
Query:  135 ILTLPAXXXXXXXXXXXXXQVSEKYTQEKPSNEEQTNANAAP-ASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIXXXXXXXKFNFLTSSDPYHAYYQHRLSEFRAQNQSSAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEPAL--PFKLPVQNVLEPPEPEHYTVRV 668
            IL L A             Q++++  +E+    EQ N+N AP A+VATHTRTIGIIHPPPDIR IV+KTAQFV+KNG EFEKRII       KFNFL SSDPYHA+YQH+L+E+RAQN+  AQ                             T+P L   F++P    LE PEPE YTVR+
Sbjct:    7 ILPLEAPPTDGKLGPLPPSQLTDQEVEERELQAEQNNSNLAPPAAVATHTRTIGIIHPPPDIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQHKLTEYRAQNKDGAQ----GTDDSDGTTDPQLDTGAADESEAGDTQPDLQAQFRIP-SKPLEAPEPEKYTVRL 182          
BLAST of EY728528 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  210 TQEKPSNEEQTNANAAPASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIXXXXXXXKFNFLTSSDPYHAYYQHRLSEF---RAQNQSSA 497
            T+ K   EE+ ++   P         +GII+PPP++RNIVDKTA FVA+NGPEFE RI        KFNFL  +DPYHAYY+H++SEF   +AQ  S+A
Sbjct:   17 TESKQPIEEEASSKEDPTPSKP---VVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAA 112          
BLAST of EY728528 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  210 TQEKPSNEEQTNA--NAAPASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIXXXXXXXKFNFLTSSDPYHAYYQHRLSEF---RAQNQSSA 497
            T+ K   EE+ ++  ++AP+        +GII+PPP++RNIVDKTA FVA+NGPEFE RI        KFNFL  +DPYHAYY+H++SEF   +AQ  S+A
Sbjct:   17 TEPKQPTEEEASSKEDSAPSKPV-----VGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAA 112          
BLAST of EY728528 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  216 EKPSNEEQTNANAAPASVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIXXXXXXXKFNFLTSSDPYHAYYQHRLSEF---RAQNQSSA 497
            ++P+ EE ++   +  S       +GII+PPP++RNIVDKTA FVA+NGPEFE RI        KFNFL  +DPYHAYY+H++SEF   +AQ  S+A
Sbjct:   20 KQPTEEEASSKEDSTPSKPV----VGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAA 112          
BLAST of EY728528 vs. ExPASy Swiss-Prot
Match: SA114_SCHPO (Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe GN=sap114 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.649e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  291 GIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIIXXXXXXXKFNFLTSSDPYHAYYQHRLSEFR 476
            G+I PPP IR I+DK+A +VA+NGP FE++I        KF FL ++DPYH YYQH+L+E R
Sbjct:   33 GVILPPPAIREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAR 94          
The following BLAST results are available for this feature:
BLAST of EY728528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3A1_ARATH9.935e-3548.07Probable splicing factor 3 subunit 1 OS=Arabidopsi... [more]
SF3A1_MOUSE5.293e-2050.51Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3... [more]
SF3A1_HUMAN5.293e-2050.50Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3... [more]
SF3A1_BOVIN1.179e-1950.52Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1... [more]
SA114_SCHPO1.649e-1354.84Pre-mRNA-splicing factor sap114 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728528 ID=EY728528; Name=EY728528; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGAAAAAAAAATTGATAGATATTTCAGATAACAAACTTAGC
TTGAAATTGTGTTGATACAAGACGGTTTATAAATTCTGAAATAAGTCACT
GCTTCTTGCAAAAACAATGCCAGGAGTGTCGCCAATCTTGACTCTTCCAG
CACCTCCTTCCGATGGAGATCTTGGTCCTCTTCCTCCATCTCAGGTGTCA
GAAAAGTATACGCAGGAGAAACCATCAAACGAGGAGCAGACCAATGCTAA
CGCTGCTCCTGCATCGGTTGCAACCCACACGAGAACAATTGGAATTATTC
ATCCTCCTCCAGATATCAGAAATATTGTTGACAAAACTGCTCAGTTCGTC
GCTAAGAATGGACCAGAATTTGAGAAGAGGATCATTGCGAACAATGCTAA
TAATGCCAAGTTCAATTTTTTGACTAGTTCAGATCCTTATCATGCATATT
ACCAACATCGGCTGTCTGAATTTCGTGCGCAGAATCAATCTTCTGCCCAG
AAACCTTCTTCAGAGCCCATGGATTCTGCTGCACCTGAGTCAGAGCCATC
TGCGGTGGCTGCTGATGGTAGTGATGCAGCTGCCAAGACTGAGCCGGCTC
TTCCATTTAAACTACCTGTACAGAATGTCCTTGAGCCCCCTGAACCCGAG
CACTATACCGTGCGGGTTTCCCGAAGGGATAACTGGGCAAGAACCTGACT
TGATTTTCCTGAATGCCCCCGCTGTTACCAAAATAGGAAGATCTTCTGTA
CAAGGACTGATCGCGGGTCGGCTGTGCCGCCTGCCCGCGGCTGTCCGAAG
ACCGCCCGCTCAGCCCACTCTCCGGCTGCGACCGACCGCGCGGCCGCGCT
GTGCCGTGGTCTGCTCTGCTCTCTGTGTCTCGGGCGCAGGCAGCTCCGCT
GGGCGTGGACCGGC
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