EY728527

Overview
NameEY728527
Unique NameEY728527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728527_ssr474 microsatellite EY728527_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY728527 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.005e-15
Identity = 62/169 (36.69%), Postives = 79/169 (46.75%), Query Frame = 3 
Query:   54 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDN--XXXXXXXXXXXXXVATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRPGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYLLVVEKSGMLV 533
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +Y    +KSGM+V
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADG--EGSDSDEANEYYTGGQKSGMMV 170
The following BLAST results are available for this feature:
BLAST of EY728527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBAX1_ARATH3.005e-1536.69UBA and UBX domain-containing protein At4g15410 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728527 ID=EY728527; Name=EY728527; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGAAAAATCGAAAACGAATCGGATCAATGGAGAAACCAACA
GCAGAAGCTAACTCTTCTTTAATCAATTCTTTCGTGGAGATCACATCATC
CACCAAAGACGAAGCTCTCTTCTTCTTGGAGTCTCATCAGTGGAATCTAG
ACGCCGCCGTTTCGACTTTTCTAGACAACGCCGCAGCTGCCACTGCCTCC
CCCGAAGCGTCTCAATCGGTCGCTACTCTCCCTGCCGTTAACTCCCCATC
GCTTTCAAACTCCCCCTCGACCTCTCCGTCTGCGTCTTTGTCTCGTTCCC
CGTCCCGGTCTCGGTCGCCATCACCTGCTGCGGCTCGCGATCCGTACGAG
CTGCGTTCCCGAAGCCGACCGGGGAAGAAGGAGGATAAGAAGGCGGCGAC
TGGGACATCACGTGGGGGCATTCGGACTCTTGCTGATCTGAATAGGACTC
CTCCTGGTGGGGCCGATAGCGATGACGACGACGACGAGCCGCAGCAGTAT
TTACTGGTGGTTGAGAAGAGCGGGATGCTGGTCCANATCCTACCANAGGA
GATCAGTGGATGAAATTTTCAATCAAGCTAGACAATCAGCTGTAGAAAGG
CCTGACCTTCGAGCATTCTCAAGCTCAAAAGCCTTCACTGGAACAGCAAG
GTTACTCTCTGGAGGAGGAGGGATCATCTGCTCCACCTCCTCCGCCTGAA
AATGCTTACACAACATCACTTTTGGGAGGAATAGGGTCCATGGTAGAGTG
AGGGTCCTCGCGGGGGGTAGGATAGATCGGGCGATGCCCCCATATGGAAA
GAGTTCGGAGGGCCCGCNTCCGGAGGGATCGTGGTCGGAGGGTAGAGAAA
AACGGGTGGTCTGGTGAAGCNTGCGGTTGCAGAAGAGAGGAAAGCTGGGT
ACGTCTTGTGCCCG
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