EY728489

Overview
NameEY728489
Unique NameEY728489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.258e-25
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +K    ++M+ AI  LSREL KLR GRA+P +LD + VE  G + PLN LA V+V +++ L I PYD   +  +E AI+ S LGL P  DGQ +  AIP LT+E  + + ++V+KT+E+ K ++R  R+ A D +KK
Sbjct:    5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIRRDANDELKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.788e-23
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M  A  AL REL KLR GRA+P MLD I VE  G + PLN LA +SV +++ L I P+D +++ ++E AI  S LGL P  DG  +   IP LT+E  + + K+V K++E+ K ++R  R+ A D +KK      L  D ++R+ ++
Sbjct:   12 RMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIRRDANDDLKKRQKDGELTEDDLRRVTED 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.335e-23
Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            +M+ A+ A +REL  +R GRA+ G+L+ + V+  GV  P+N LA +SV +++ L I PYD + +KE+E AI++S LGL P  DG  +   IP LT+E  + + K+V K SED K ++R  R+ A D +KK
Sbjct:   12 KMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIRRDANDELKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_PELCD (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 59/152 (38.82%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  310 SQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESAD 759
            S M+ A+ +L +++TK+RTGRAS  +LD ++V+  G   PLN +  ++V + + ++I P++   L ++E AI  + LGLNP  DG  +   IP +T+E  + M KVV K  ED K  +R +R+ A D MKK      +  D +KR EKE  D
Sbjct:   11 SGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEKKLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSARRDANDGMKKLEKNKEISEDDLKRGEKEIQD 162          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DEHE1 (Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain 195) GN=frr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 60/151 (39.74%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSS--LPXDSMKR 738
            + + +  +M A++  LS+EL+ +RTGR+SP +++HI VE  GV  P+NHLA ++  D + ++I P+D + L  +E AI+ S LGL P  DG  +   IP L++E  Q M K+V+K  E+ K ++R  R+ A+D MKK   S  +  D +KR
Sbjct:    5 ILQKSEKKMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVRRDAMDEMKKLEKSKEISQDDLKR 155          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOTE (Ribosome-recycling factor OS=Clostridium tetani GN=frr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.049e-23
Identity = 61/153 (39.87%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  292 VKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPXDSMKRLEKE 750
            +  T   +M  A++AL ++L  L+ GRA+P MLD I  E  G   PL+ LA +SV +++ L I P+D ++LK +E AI+ S LGLNP  DG  +   IP LT+E  + + K V K  ED K +IR  R+   D +K   S +  D +K+ E+E
Sbjct:    5 IMNTAEDKMSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDKSSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRSVRRDGNDKIKDLKSDMSEDDIKKAEEE 157          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.982e-23
Identity = 63/153 (41.18%), Postives = 96/153 (62.75%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKESADDI 765
            +ME A+ +L RE  KLRTGRAS  ++D+I V+  G   P++ LA VSV DS+TL+I P+D +  + +E AI+ S LGLNP  DG+ +  +IP LT+E  + + KV  K +E+ K ++R  R+ A D +KK   G  +  D +++    S DD+
Sbjct:   13 RMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVRRDANDALKKLEKGKEISEDDVRK----STDDV 161          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.982e-23
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  280 IGPTVKETTVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMK--KAGSSLPXDSMKRLEKE 750
            I   +KE    +M  +I AL +ELT ++ GRA+P MLD I V+  G   PLN LA +SV +S+ L I P+D + +K +E AI+ S LGLNP  DG  +   IP LT+E  + + K V K  ED K ++R  R+ A D +K  K  +S+  D MK  E +
Sbjct:    2 ISDIIKELE-EKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIRRDANDKVKSLKKDNSITEDEMKSAEND 159          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_BACSU (Ribosome-recycling factor OS=Bacillus subtilis GN=frr PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.982e-23
Identity = 57/133 (42.86%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  304 TVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK 702
            T  +ME AI A  REL  +R GRA+P +LD + VE  G + PLN L+ ++V +++ L I PYD   + ++E AI+ + LGL P  DG  +  AIPALT+E  + + KVV K +E+ K ++R  R+ A D +KK
Sbjct:    9 TKEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVRRDANDDLKK 141          
BLAST of EY728489 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.201e-23
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  313 QMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELECAIVSSPLGLNPKVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK--AGSSLPXDSMKRLEKE 750
            +M+ A+ A SREL  +R GRA+ G+L+ + V+  GV  P+N LA +SV +++ L I PYD + +KE+E AI++S LG+ P  DG  +   IP LT+E  + + K+V K SE+ K ++R  R+ A D +KK    S +  D ++    E
Sbjct:   12 KMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELRSYTDE 159          
The following BLAST results are available for this feature:
BLAST of EY728489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACSK7.258e-2544.53Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_BACHD1.788e-2341.22Ribosome-recycling factor OS=Bacillus halodurans G... [more]
RRF_GEOKA2.335e-2343.08Ribosome-recycling factor OS=Geobacillus kaustophi... [more]
RRF_PELCD3.049e-2338.82Ribosome-recycling factor OS=Pelobacter carbinolic... [more]
RRF_DEHE13.049e-2339.74Ribosome-recycling factor OS=Dehalococcoides ethen... [more]
RRF_CLOTE3.049e-2339.87Ribosome-recycling factor OS=Clostridium tetani GN... [more]
RRF_DESVM3.982e-2341.18Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_CLOAB3.982e-2341.51Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_BACSU3.982e-2342.86Ribosome-recycling factor OS=Bacillus subtilis GN=... [more]
RRF_GEOTN5.201e-2339.19Ribosome-recycling factor OS=Geobacillus thermoden... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728489 ID=EY728489; Name=EY728489; organism=Citrus sinensis; type=EST; length=929bp
CCACGCGTCCGATAACGAAAAATCATGGCAATGCATCTAAGACGAGCAAT
CTCTAATCGAAACGCAACACTGCTTCTTAGAAATGGAAGCTCTTCTCTTC
AATCACAGCGAAGCTGGTTCCATACTCCCTGCTCCCGCAGTAATGGGTTC
TTTAGGACCCGGTACAGTGATCCAAGTCTTTCGGCTTTCGGCTTCATGCA
AGGTTGTCGTCGAGGATTCGCCAAAGGCAAAAGATCAAAGGATGATTCTG
GTGCTGGAAGTACAGTTGAAATTGTGGATATTGGTCCCACTGTTAAGGAA
ACTACTGTCTCACAGATGGAAGCAGCAATAGTTGCATTGTCACGCGAACT
GACCAAATTAAGAACAGGAAGGGCGTCACCAGGAATGCTTGACCACATTA
TTGTTGAAACTGGTGGAGTGAAGATGCCCTTGAATCATTTAGCTGTTGTT
TCAGTGCTAGATTCTAAGACCTTATCAATTAATCCCTATGATCCAAATAC
CCTGAAAGAGTTAGAGTGCGCCATTGTTTCATCTCCGCTAGGGTTAAATC
CTAAAGTGGATGGGCAACGTTTGATTGCAGCTATTCCAGCATTGACCAAA
GAGCATATCCAGGCAATGTGTAAGGTAGTAGCCAAGACGAGTGAAGATGT
CAAACAAAGTATTAGAAGGTCTCGGCAGAAGGCGTTGGATATGATGAAGA
AAGCAGGTTCAAGTTTGCCCANGGATTCAATGAAGAGATTGGAGAAAGAG
TCAGCGGATGATATCNTGCAGGCAAAAGAGAAGGAAATNATGAAGGCTGA
GTCTGCTGATACATTTCGGATATTATTGAAACGCGTTGGAATATGGACAA
CTGAAANACTATCAAAACCCTTCACTTATCATATCCTGAATCTTNGTATT
TTTCCTAGTCATGAGAGGCNAGGTAATGC
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