EY728426

Overview
NameEY728426
Unique NameEY728426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:400..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.187e-71
Identity = 127/137 (92.70%), Postives = 134/137 (97.81%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            +KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA KR
Sbjct:  115 SKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.046e-70
Identity = 126/136 (92.65%), Postives = 131/136 (96.32%), Query Frame = 3 
Query:   15 KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEA KR
Sbjct:  120 KFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 263.462 bits (672), Expect = 7.897e-70
Identity = 124/137 (90.51%), Postives = 133/137 (97.08%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEA KR
Sbjct:  119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.897e-70
Identity = 124/137 (90.51%), Postives = 133/137 (97.08%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEA KR
Sbjct:  119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.759e-69
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            +KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+A KR
Sbjct:  119 SKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 2.298e-69
Identity = 123/137 (89.78%), Postives = 132/137 (96.35%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE  KR
Sbjct:  119 AKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.919e-69
Identity = 123/137 (89.78%), Postives = 132/137 (96.35%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEA KR
Sbjct:  119 AKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.119e-69
Identity = 122/137 (89.05%), Postives = 132/137 (96.35%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE  KR
Sbjct:  119 AKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY728426 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 3 
Query:   12 AKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAXKR 422
            AK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  119 AKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of EY728426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RS4_PRUAR4.187e-7192.7040S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI6.046e-7092.6540S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS42_ARATH7.897e-7090.5140S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH7.897e-7090.5140S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU1.759e-6989.7840S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ2.298e-6989.7840S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH3.919e-6989.7840S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_MAIZE5.119e-6989.0540S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4_CRIGR2.552e-5267.1540S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_CHICK2.552e-5267.1540S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728426 ID=EY728426; Name=EY728426; organism=Citrus sinensis; type=EST; length=697bp
CCACGCGTCCGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTT
GGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCG
CTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAG
AAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTC
ATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAG
GGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTG
GTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGGAAGGGT
TCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCAT
CATTGAGGAAGCTANGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTT
TTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGTTGAATT
AGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGA
ATCTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTG
TCCTTTTTTATTTTAGCTACTATTTGGTGGATGTGATTCATATTATCTAT
CAGNNGTCCTGTATCTCTTTATCGTNTCTGTTTGTTGGNNAAAAAAA
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