EY728406

Overview
NameEY728406
Unique NameEY728406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11143 contig Csv1_Contig11143:28..319. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728406 vs. ExPASy Swiss-Prot
Match: SUBI_SHIFL (Sulfate-binding protein OS=Shigella flexneri GN=sbp PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.566e-22
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   14 KRAIPRIATEYLKHLYSPAGQEIAAKNFYRPRDEKVAAKYAQQFPKLDLVTIDKDFGGWKTAQPKFFNDGGVFDQI 241
            K+    +A  YLK+LYSP GQEIAAKN+YRPRD +VA KY   FPKL L TID++FGGW  AQ + F +GG FDQI
Sbjct:  251 KKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQI 326          
BLAST of EY728406 vs. ExPASy Swiss-Prot
Match: SUBI_ECOLI (Sulfate-binding protein OS=Escherichia coli (strain K12) GN=sbp PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.566e-22
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   14 KRAIPRIATEYLKHLYSPAGQEIAAKNFYRPRDEKVAAKYAQQFPKLDLVTIDKDFGGWKTAQPKFFNDGGVFDQI 241
            K+    +A  YLK+LYSP GQEIAAKN+YRPRD +VA KY   FPKL L TID++FGGW  AQ + F +GG FDQI
Sbjct:  251 KKGTKEVAEAYLKYLYSPEGQEIAAKNYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQI 326          
BLAST of EY728406 vs. ExPASy Swiss-Prot
Match: SUBI_SALTY (Sulfate-binding protein OS=Salmonella typhimurium GN=sbp PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.381e-20
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   14 KRAIPRIATEYLKHLYSPAGQEIAAKNFYRPRDEKVAAKYAQQFPKLDLVTIDKDFGGWKTAQPKFFNDGGVFDQI 241
            K+    +A  YLK+LYSP GQEIAAKNFYRPRD  VA KY   FPKL L TID+ FGGW  AQ   F +GG FDQI
Sbjct:  251 KKDTKAVAEAYLKYLYSPEGQEIAAKNFYRPRDADVAKKYDDAFPKLKLFTIDEVFGGWAKAQKDHFANGGTFDQI 326          
BLAST of EY728406 vs. ExPASy Swiss-Prot
Match: CYSA_CUCSA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Cucumis sativus GN=CYSA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.900e-19
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   35 ATEYLK---HLYSPAGQEIAAKNFYRPRDEKVAAKYAQQFPKLDLVTI-DKDFGGWKTAQPKFFNDGGVFDQIYSAQ 253
            AT Y++    LY+PA QEI AKN+YRP D+ VAAKY  +FPK+ LVTI DK FGGW+ AQ   F+DGG FDQIY  Q
Sbjct:  272 ATAYVRPHEFLYTPAAQEIIAKNYYRPIDKTVAAKYESKFPKVKLVTIDDKIFGGWRKAQKDHFSDGGTFDQIYQPQ 348          
BLAST of EY728406 vs. ExPASy Swiss-Prot
Match: SUBI_SYNY3 (Sulfate-binding protein OS=Synechocystis sp. (strain PCC 6803) GN=sbpA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 30/79 (37.97%), Postives = 56/79 (70.89%), Query Frame = 2
Query:    5 TPRKRAIPRIATEYLKHLYSPAGQEIAAKNFYRPRDEKVAAKYAQQFPKLDLVTIDKDFGGWKTAQPKFFNDGGVFDQI 241
            T  K+    +   ++++L++P  Q+I A+  +RP +E+V AK+A Q+PK++ +   ++FGGWK AQ +FF++GG+FD++
Sbjct:  267 TVDKKGTREVRDAFVQYLFTPEAQQIFAETGFRPVNEEVLAKFASQYPKVENLATIEEFGGWKKAQAEFFDEGGIFDKV 345          
The following BLAST results are available for this feature:
BLAST of EY728406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SUBI_SHIFL9.566e-2261.84Sulfate-binding protein OS=Shigella flexneri GN=sb... [more]
SUBI_ECOLI9.566e-2261.84Sulfate-binding protein OS=Escherichia coli (strai... [more]
SUBI_SALTY1.381e-2063.16Sulfate-binding protein OS=Salmonella typhimurium ... [more]
CYSA_CUCSA9.900e-1961.04Sulfate/thiosulfate import ATP-binding protein cys... [more]
SUBI_SYNY31.252e-1337.97Sulfate-binding protein OS=Synechocystis sp. (stra... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-C11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728406 ID=EY728406; Name=EY728406; organism=Citrus sinensis; type=EST; length=292bp
AAGAACGCCGAGAAAAAGGGCAATACCGAGAATCGCCACCGAGTACCTCA
AGCACCTGTACAGCCCGGCTGGCCAGGAGATTGCGGCGAAGAACTTCTAC
CGCCCACGCGATGAGAAAGTCGCCGCCAAATACGCCCAGCAGTTCCCGAA
ACTGGACCTGGTGACTATCGACAAAGACTTCGGCGGCTGGAAAACTGCCC
AACCGAAATTCTTCAATGACGGTGGCGTGTTCGACCAGATTTACTCGGCG
CAGTAAGCAAAATCAAACTGTAGGAGCCAGCTTTCTGTGGGA
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