EY728371

Overview
NameEY728371
Unique NameEY728371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728371 vs. ExPASy Swiss-Prot
Match: FMDA_METME (Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.776e-52
Identity = 97/179 (54.19%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  210 VVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDFTGGAIKDNDSAIDVKTSDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLPGDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHIPGVRFPGLTHPGIIGTAPSMELLKIWNERESELEET 746
            +V +DL KKP EQ   +HNRWHP++P +A VK G+ FRVE +D+TGG I +NDSA DV+  DL+ VHYLSGPI V       A+PGDL+ V+I ++G     +WG+   F +ENGGGFLTDHFP A+K IW F G+Y  S H+P VR+ G+ HPG+IG  PS ELL  WN+RE +L  T
Sbjct:    4 IVKLDLDKKPWEQDGQIHNRWHPDLPMIAMVKPGDEFRVECMDWTGGQIGNNDSANDVRDVDLTQVHYLSGPIGVEG-----AEPGDLMVVDILDVGTFDDSQWGFNGLFAKENGGGFLTDHFPEASKTIWDFHGVYTTSRHVPKVRYAGIMHPGLIGCLPSKELLDTWNKREGDLIAT 177          
BLAST of EY728371 vs. ExPASy Swiss-Prot
Match: FMDA_SCHPO (Putative formamidase C869.04 OS=Schizosaccharomyces pombe GN=SPAC869.04 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.784e-51
Identity = 103/208 (49.52%), Postives = 133/208 (63.94%), Query Frame = 3
Query:  201 PTVVVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDFTGGAIKDNDSAIDVKTSDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLPGDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHIPGVRFPGLTHPGIIGTAPSMELLKIWNERESELEETGLQSLKLCEVLHTRTLANYIGQGLLA 824
            P  +V +DL K   EQ   LHNRWHP+IP    +  GE  ++E +D+TGG IK++DSA D+K  DL+ +HYLSGP ++       A+PGD+L VEI ++ PL    WGY+  F +ENGGGFL +H+P A KA++ FEGI+  S HIPGVRFPGL HPGIIGTAPS E+L  WN RE  L      S  +   L     A+Y   G+LA
Sbjct:    3 PRTIVKVDLNKPAWEQP-NLHNRWHPDIPFAESIDEGETVKIECLDWTGGQIKNDDSAEDIKNVDLTRIHYLSGPFEIKG-----AEPGDVLVVEIQDVQPLENQPWGYSGIFAKENGGGFLDEHYPKAAKAVFDFEGIFCSSRHIPGVRFPGLIHPGIIGTAPSKEILAEWNRREGALVAENPHSTHVMAQLPN---ASYAFAGILA 201          
BLAST of EY728371 vs. ExPASy Swiss-Prot
Match: AMDA_MYCSM (Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.322e-47
Identity = 97/189 (51.32%), Postives = 122/189 (64.55%), Query Frame = 3
Query:  201 PTVVVPIDLKKKPNEQKLTLHNRWHPEIPPVAEVKVGELFRVEMVDFTGGAIKDNDSAIDVKTSDLSTVHYLSGPIKVVDEQGIPAKPGDLLAVEICNLGPLP-------GDEWGYTATFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPHIPGVRFPGLTHPGIIGTAPSMELLKIWNERESELEET 746
            P VV  +D  K   +Q +  HNRWHP+IP  A VK G  FR+E  ++T G I +NDSA DV+  DL+  H LSGPIKV       A+PGDLL V+I ++GP+P       G+ WGY+  F + NGGGFLTD++P A KAIW F G    S H+PGVR+ G+THPG+ GTAPS +LL  WNERE  L  T
Sbjct:    2 PEVVFSVDHSKSMRDQAVPGHNRWHPDIPAAATVKPGSEFRIECKEWTDGQIGNNDSANDVRDVDLAPCHMLSGPIKVEG-----AEPGDLLIVDILDIGPVPQTNGPNCGEGWGYSGIFAKVNGGGFLTDYYPDAYKAIWDFHGQQCTSRHVPGVRYTGITHPGLFGTAPSPDLLAKWNERERALIAT 185          
The following BLAST results are available for this feature:
BLAST of EY728371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FMDA_METME6.776e-5254.19Formamidase OS=Methylophilus methylotrophus GN=fmd... [more]
FMDA_SCHPO9.784e-5149.52Putative formamidase C869.04 OS=Schizosaccharomyce... [more]
AMDA_MYCSM1.322e-4751.32Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-H04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728371 ID=EY728371; Name=EY728371; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGAGCAGAGTCATTGGAAAAATTTGTCCCCCAGTTTGTCAG
TCAGCTCTCAGCTATCAAGTATCCCATCCGGACGTGTCGACTTCTTTTTC
TGCAATAAACCGAAATTTGATTAATCTAATAAATCGTCAAAAATATAAGA
ATCTTGAAACTCTCTGAATCTTTACAGATTCATCCATGGCTCCAACAACC
CCAACGGTGGTAGTGCCAATAGACTTGAAGAAGAAACCAAATGAGCAAAA
GCTAACCCTTCACAACAGATGGCACCCCGAGATTCCTCCGGTGGCAGAAG
TTAAAGTTGGTGAGCTTTTCAGAGTAGAGATGGTAGATTTTACTGGGGGT
GCGATAAAAGATAATGATTCTGCAATTGATGTGAAAACCTCAGACCTCTC
CACAGTGCATTATCTCAGCGGACCGATCAAAGTTGTGGATGAACAAGGAA
TTCCAGCGAAGCCAGGTGATCTTCTTGCAGTTGAAATATGCAACTTGGGT
CCTCTGCCTGGAGATGAATGGGGTTATACAGCAACATTTGATAGAGAAAA
TGGAGGTGGTTTTTTGACTGATCATTTCCCTTGTGCAACCAAAGCTATTT
GGTACTTCGAAGGAATTTATGCCTACTCTCCTCACATACCGGGGGTACGA
TTTCCAGGTTTAACTCACCCTGGCATAATTGGAACTGCCCCATCAATGGA
ACTCCTGAAGATATGGAATGAAAGGGAAAGCGAACTTGAAGAAACTGGTC
TTCAATCCCTCAAATTATGTGAGGTCTTGCATACGCGAACATTGGCAAAC
TACATTGGACAAGGGCTGCTTGCTTGGACAAATCAAGAAGGAACTCTGAA
TGGAAAAAATTGTATGGAGGCTGCAGGACATTCCANGAAGAAAAAATGAG
GAAATGTGA
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