EY728365

Overview
NameEY728365
Unique NameEY728365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728365 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.684e-25
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  281 FXEEKPQV--NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGXSLSDELLAF-DNQVKFLPM 655
            F EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+
Sbjct:  242 FMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPL 342          

HSP 2 Score: 51.6026 bits (122), Expect = 3.684e-25
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   16 KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSDQDYYNNVS 279
            KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S
Sbjct:  148 KGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMS 241          
BLAST of EY728365 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.225e-23
Identity = 47/98 (47.96%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  281 FXEEKPQV-----NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKS 559
            F EEK QV     NQ+G   S  D G  G++           YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS
Sbjct:  226 FMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQ-----------YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS 308          

HSP 2 Score: 58.9214 bits (141), Expect = 4.225e-23
Identity = 36/75 (48.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   16 KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 237
            +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN N
Sbjct:  145 EGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSN 218          
BLAST of EY728365 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.060e-20
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 2
Query:  359 PFVPTADDT-PV---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGXSLSD 613
            PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D
Sbjct:  238 PFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD 318          

HSP 2 Score: 56.225 bits (134), Expect = 1.060e-20
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   16 KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYY 267
            KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N++   Y
Sbjct:  140 KGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVY 220          
The following BLAST results are available for this feature:
BLAST of EY728365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RAP22_ARATH3.684e-2542.97Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH4.225e-2347.96Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ1.060e-2043.96Ethylene-responsive transcription factor 1 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-G08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728365 ID=EY728365; Name=EY728365; organism=Citrus sinensis; type=EST; length=744bp
CCACGCGTCCGCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATAC
CGCTGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTG
GGAAGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCA
AAGAGCTCAGTGAAGGCAAACTCTCAGAAATCCGTTCCCAAAGCTTGCCT
AAGCCCCGTGCAGCCAAGTTTGAACCAAAACTTCAATTACTTGAACAACT
CCGATCAGGATTACTACAACAATGTGAGTATTCNTGGAGGAGAAACCACA
AGTGAATCAGTATGGATATATGGGCTCCTTCCCTGATGATGGAGAACTAG
GATTCAAACCCTTTGTGCCAACAGCTGATGATACTCCTGTGTACTTCAAC
TCTGACCAAGGCAGTAACTCCTTTGATTGTTCTGACTTTGGCTGGGGAGA
ACAGGCACCAAAGACTCCTGAAATCTCATCTGTTTTGGAAGCTACCCCTG
AAGTTGATGAATCTCAGTTTGTGGATGCGGTTGCAAACCCGATGAAGAAG
CTGAAATCTAACTCTGAGAATGCTGTGCCTGTTCAGGATAACAATGGANA
GTCTCTGTCTGATGAGCTTTTGGCTTTTGACAATCAGGTGAAGTTCTTGC
CAATGCCGTATCTGAAGGAAGCTGGAGGCCTCCTCGATGCTTCCTCATGG
TGACACCCAGATGTGGAATGATACTGACTGAATCTCCAGTGGCA
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