EY728360

Overview
NameEY728360
Unique NameEY728360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_DESPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfotalea psychrophila GN=clpX PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.879e-55
Identity = 114/205 (55.61%), Postives = 148/205 (72.20%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF++ DAT LT+AGYVG+D E++L  LL AAD+DVE AQRGI+YIDE+DKI  K++S +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + IDT +ILFICGGAFVGL + +  R    SIGF A + A+ R+         S LLE+V   DL+ +GLIPE+ GR P++ SL  L+ED LV++LREP NAL  +
Sbjct:  140 PFSVADATTLTEAGYVGDDVENILVSLLQAADYDVEKAQRGIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASV--PPKGGRKHPQQELVKIDTTNILFICGGAFVGLGRVVKRRAGKKSIGFSADLSADKRS--------ESELLEAVRPEDLLKFGLIPELVGRLPVIASLRELSEDDLVRILREPKNALTRQ 334          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_SINMW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sinorhizobium medicae (strain WSM419) GN=clpX PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.372e-55
Identity = 118/207 (57.00%), Postives = 151/207 (72.95%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA VRA  + R G          +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NALV++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHIME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium meliloti GN=clpX PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.372e-55
Identity = 118/207 (57.00%), Postives = 151/207 (72.95%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA VRA  + R G          +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NALV++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_MARAV (ATP-dependent Clp protease ATP-binding subunit clpX OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.372e-55
Identity = 113/205 (55.12%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFTI DAT LT+AGYVGED E+++ KLL   D+DVE AQRGIVYIDE+DKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K I ER + SSIGF A V++        D+  T  ++  V + DLV +GLIPE  GR P++ +L+ L+E+ LVQ+L EP NAL ++
Sbjct:  142 PFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASV--PPQGGRKHPQQEFLQVDTGNILFICGGAFAGLDKVIQERSERSSIGFSATVKSQ------DDSKSTGDIIREVETEDLVKFGLIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQ 338          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.372e-55
Identity = 116/205 (56.59%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA V+A        D      +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NALV++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAE-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHIEC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.322e-55
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA V+A        D      +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NAL+++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHIE6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CIAT 652) GN=clpX PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.322e-55
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA V+A        D      +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NAL+++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_SYMTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Symbiobacterium thermophilum GN=clpX PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.087e-54
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PF I DAT+LT+AGYVGED E++L KL+ AAD+D+E A+RGIVYIDEVDKI  K+E+ +  RDVSGEGVQQALLK+LEGT+ +V  P  G RKHP  + I I+T +ILFICGGAF G++K I+ R   S +GFGA +R+               LL+ +   DL+ +GLIPE  GR PI+V+L AL+ED LV++LREP NALV++
Sbjct:  137 PFAIADATSLTEAGYVGEDVENILLKLIQAADYDIEKAERGIVYIDEVDKIARKSENPSITRDVSGEGVQQALLKILEGTIASV--PPQGGRKHPHQEFIQINTTNILFICGGAFDGIDKIIANRVGRSGLGFGADIRSKQEQN-------VGELLKQIMPEDLLKFGLIPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQ 332          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHISN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium sp. (strain NGR234) GN=clpX PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.854e-54
Identity = 116/207 (56.04%), Postives = 151/207 (72.95%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL AAD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA VR+  + R G          +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NAL+++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVRSPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQ 336          
BLAST of EY728360 vs. ExPASy Swiss-Prot
Match: CLPX_RHILW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=clpX PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.854e-54
Identity = 114/205 (55.61%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   12 PFTITDATALTQAGYVGEDAESLLYKLLAAADFDVEAAQRGIVYIDEVDKIV-KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVHSGDLVAYGLIPEVRGRWPILVSLSALNEDQLVQVLREPGNALVER 623
            PFT+ DAT LT+AGYVGED E+++ KLL +AD++VE AQRGIVYIDEVDKI  K+++ +  RDVSGEGVQQALLK++EGTV +V  P  G RKHP+ + + +DT +ILFICGGAF GL+K IS R + +SIGFGA V+A        D      +L  +   DLV +GLIPE  GR P+L +L  L+ED L+Q+L EP NAL+++
Sbjct:  141 PFTMADATTLTEAGYVGEDVENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV--PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQ 336          
The following BLAST results are available for this feature:
BLAST of EY728360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_DESPS4.879e-5555.61ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SINMW6.372e-5557.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIME6.372e-5557.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MARAV6.372e-5555.12ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRT56.372e-5556.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIEC8.322e-5556.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIE68.322e-5556.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYMTH1.087e-5456.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHISN1.854e-5456.04ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILW1.854e-5455.61ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-G01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728360 ID=EY728360; Name=EY728360; organism=Citrus sinensis; type=EST; length=894bp
CACGCGTCCGGCCATTTACCATCACTGATGCAACAGCTTTAACGCAGGCT
GGGTATGTTGGAGAAGACGCGGAATCACTATTGTACAAGTTGTTAGCGGC
TGCTGATTTCGACGTGGAAGCAGCTCAGAGAGGGATCGTCTACATTGATG
AAGTTGATAAGATAGTGAAGGCTGAGAGTCGAAACAATGGCAGAGATGTA
TCGGGCGAGGGAGTCCAACAGGCATTACTGAAAATGCTAGAAGGAACTGT
AGTAAATGTTCCTATACCTGATAACGGACCTCGGAAGCATCCTCGTGGTG
ATAACATTCCAATTGATACGAAAGATATCCTTTTCATATGTGGTGGTGCC
TTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTAT
TGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACTG
ATGCGCTTGTGACGTCATCATTGTTGGAATCAGTACATAGTGGTGATCTT
GTAGCATATGGCCTCATTCCTGAAGTGCGTGGACGGTGGCCGATTTTAGT
GAGCTTGTCAGCTTTAAATGAGGATCAACTCGTTCAGGTTCTCCGTGAGC
CGGGAAATGCCCTGGTGGAGAGGCCCACAACAGTTTCGAGCGGAGTAGTG
TGGGCTGGCGGCGACTGGCCATCGCCTGTGATTCTTTGGCGCAGTCCGCG
GCAGAGAACCGGGGGCGTCGGGGTCGAGAAACCGCTTGCGAGGGGTGCCT
AGCGTGGGCCCTCGTCGACATAGCGAAGGGTGCGATGCGAGGTCGAGTGC
GGGGCGGGCGGGGCGGTGGGGAAGGGCGCCGATCCGGAAGCGATAGGAGA
GCGTGCGAGAGCCGGTCGCGCGGGCGGGGGGCGTGGTGGGCCGC
back to top