EY728260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 407.527 bits (1046), Expect = 5.270e-113 Identity = 206/242 (85.12%), Postives = 216/242 (89.26%), Query Frame = 1 Query: 169 PETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 P A GQ+PG NP IPGMFPNMFPL +GQ FGALPVMP+QAMTQQATRHARRVYVGGLP ANEQSVATFFS VM+AIGGNTAGPGDAVVNVYIN+EKKFAFVEMRSVEEASNAMALDGIIFEGAP KVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL+PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 188 PGITAAAGQVPGTNPPIPGMFPNMFPLASGQ-FGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 428
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 399.823 bits (1026), Expect = 1.099e-110 Identity = 202/244 (82.79%), Postives = 214/244 (87.70%), Query Frame = 1 Query: 163 LQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 L P GQ+PG NPAIPG+F NMFPL + Q FGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDG+IFEG PVKVRRPSDYNPSLAATLGPSQP+PNLNLAAVG TPGS+GGLEGPDRIFVGGLPYYFTE+QIRELLESFG LRGFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 168 LLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQ-FGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDK 410
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 395.586 bits (1015), Expect = 2.072e-109 Identity = 197/240 (82.08%), Postives = 215/240 (89.58%), Query Frame = 1 Query: 181 AIFGQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 A+ GQ+P A P +PG MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAM+LDGIIFEGAPVKVRRPSDYNPSLAATLGPSQP+P+LNLAAVGLTPG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 189 AVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDK 428
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 390.963 bits (1003), Expect = 5.104e-108 Identity = 198/246 (80.49%), Postives = 211/246 (85.77%), Query Frame = 1 Query: 163 LQPETIAIFGQIPGA--NPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 L +A GQ+P IPGMF NMFP+V GQQ GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGII EG PVKVRRP+DYNPSLAATLGPSQPNPNLNL AVGL+ GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+LVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 199 LAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDK 444
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 375.941 bits (964), Expect = 1.699e-103 Identity = 192/234 (82.05%), Postives = 206/234 (88.03%), Query Frame = 1 Query: 193 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 Q PG AIPGMFPNM P+ GQ F L + P QAMTQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+PNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 174 QFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDK 403
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 372.089 bits (954), Expect = 2.454e-102 Identity = 189/235 (80.43%), Postives = 204/235 (86.81%), Query Frame = 1 Query: 190 GQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 GQ+P PAI GM PNMF L T F L + P QAMTQQATRHARRVYVGGLPPTANE +VA +F+QVMAA+GGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 195 GQVPVVAPAISGMLPNMFNL-TQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDK 427
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 1.590e-101 Identity = 190/240 (79.17%), Postives = 207/240 (86.25%), Query Frame = 1 Query: 175 TIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 TI Q+PG++ IPGMFPNM P GQ L + P QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPSLAA LGPSQP+ NLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGN KGYAFCVY+ + + C L MGD+ Sbjct: 161 TIPTPSQLPGSS--IPGMFPNMLPFADGQ-INPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDK 396
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 343.969 bits (881), Expect = 7.156e-94 Identity = 176/234 (75.21%), Postives = 193/234 (82.48%), Query Frame = 1 Query: 193 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVYKIFQLQNSMC-CLEWD*MGDR 891 Q+P A PGMFPNM P + P+ AMTQQATRHARRVYVGGLPP ANEQ+VA FF+QVMAAIGGNT G AVVNVYINH+KKFAFVEMRSVEEASNAMALDGI+FEGAPVKVRRP+DYNPS AA LGPSQPNPNLNLAAVGLTPG+ GGLEGPDRIFVGGLPYYFTEAQ+RELLE+FGPLRGFD+VKD+ETGN KGYAFC+YK + + C L +GDR Sbjct: 232 QLPELPAANPGMFPNMLPNLVNVPALGQPL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDR 461
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 2.261e-39 Identity = 97/230 (42.17%), Postives = 131/230 (56.96%), Query Frame = 1 Query: 142 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVY 831 G + +Q + + GQIP A +P M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M +GG T PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P + PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG KGYAFC Y Sbjct: 98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
BLAST of EY728260 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 162.925 bits (411), Expect = 2.261e-39 Identity = 97/230 (42.17%), Postives = 131/230 (56.96%), Query Frame = 1 Query: 142 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNXKGYAFCVY 831 G + +Q + + GQIP A +P M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M +GG T PG+ V+ V IN +K FAF+E RSV+E + AMA DGIIF+G +K+RRP DY P + PS P + V P SA ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG KGYAFC Y Sbjct: 98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVV---PDSA------HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307 The following BLAST results are available for this feature:
BLAST of EY728260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728260 ID=EY728260; Name=EY728260; organism=Citrus sinensis; type=EST; length=908bpback to top |