EY728249

Overview
NameEY728249
Unique NameEY728249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728249_ssr243 microsatellite EY728249_ssr243:243..260. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728249_ssr101 microsatellite EY728249_ssr101:101..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11720 contig Csv1_Contig11720:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY728249 vs. ExPASy Swiss-Prot
Match: SKI30_ARATH (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.624e-42
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 3 
Query:  420 SMSELIEGLPDAVALRCLARVPFFLHPKLELVSRSWRAAIRSPELFKARQEVGSSENLLCVCAFDPEKLWQLYDPLRDLWILFLXFPQKXAPCS-LWCCLHCWKLXVLGGGSDACDPLTGD 779
            +MS L++G+P+AVALRCLA VP  LHP LELVSRSWRAAIRS ELF+ R+E+ SSE+LLCVCAFDPE +WQ+Y P  D W+     P +    +          L VLGGGSDA  P+TGD
Sbjct:    7 TMSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

HSP 2 Score: 52.7582 bits (125), Expect = 3.624e-42
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:  764 PIDWGXDGSFATNEVWSYDPGKRQWSXRASMLVPRA 871
            P+    DG+FAT++VWSYD  +RQW+ RASMLVPRA
Sbjct:  123 PVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRA 158
The following BLAST results are available for this feature:
BLAST of EY728249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI30_ARATH3.624e-4257.85F-box/kelch-repeat protein SKIP30 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-D06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728249 ID=EY728249; Name=EY728249; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGATGGTTTTAGGTTAAAGGACAAAGCAGAAGAAATAGCTC
AGCTTAATAATTTTATAACACTTGTAACGCTTCTTTCATAAATCTTTTTT
ATCAAATCAAATCAAACCACATTCTCATTAGTTGGTCATATACACCCACA
AAACCAAAACAGAAACCTTCATTTTTATTTTCTTTAAAACTCATCGTTTT
GTTCTTTTAATATCTTAGCTGTTATACACTTTCGCAGCGCAATCTCTCTC
TCTCTCTCTCCCCCTCGAGGAAAAAATAAAATATTAATAACACAATCCCA
AGTCTCGTGTCTCTCACCGTTCAACTGGGTTTCGTCTTCAGGTTGTGGTT
GTGAAGCCTATCATCAGTCTGTAGCAATTCACCGGCGAAGGATCATACAA
AACGGATGAAACTGTGGTTAGTATGTCTGAACTGATCGAAGGTCTCCCGG
ACGCTGTTGCCCTCAGGTGCCTTGCTCGGGTTCCCTTCTTCCTACATCCT
AAGTTGGAGCTTGTTTCTCGTTCCTGGAGAGCTGCTATTCGTAGCCCTGA
GCTGTTTAAAGCCCGACAGGAGGTTGGTTCATCAGAGAATTTACTATGCG
TGTGTGCTTTTGATCCTGAGAAATTATGGCAGCTTTATGACCCTCTCAGA
GACCTTTGGATACTCTTCCTGNTCTTCCCTCAAAAATANGCACCTTGCTC
ACTTTGGTGTTGTCTCCACTGCTGGAAACTGNTTGTACTTGGTGGTGGCA
GTGATGCNTGTGACCCATTGACTGGGGACNAGATGGNAGCTTCGCTACCA
ATGAGGTCTGGTCATATGACCCGGGTAAACGTCAGTGGTCTNCACGTGCA
TCCATGCTTGTGCCTCGTGCTATNTTGCATGCTGCGCATTGAAGGAAAAA
ATGTTGTCGCAGGTGGTTCAACACGTGCGGAA
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