EY754291

Overview
NameEY754291
Unique NameEY754291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.202e-76
Identity = 152/264 (57.58%), Postives = 167/264 (63.26%), Query Frame = 3
Query:   75 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYP 845
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                        PLYW AQ TMFWALFVLGHDCGHGSFSND KLNSVVGH+LHSSILVPYHGWRISHRTHHQNHGHVENDES HPLSEKI   L    +    +  F LLAYP
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPFPLLAYP 249          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.710e-75
Identity = 156/294 (53.06%), Postives = 177/294 (60.20%), Query Frame = 3
Query:   75 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYP-FIFXXXXXXXXXXXXPYMTCLSQ*E-KDVITS 938
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                        PLYWAAQGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSILVPYHGWRISHRTHHQ+HGH ENDES HPL EK+   L  V +    +  F LLA+P ++F            P        E KDVITS
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITS 286          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.447e-74
Identity = 140/245 (57.14%), Postives = 152/245 (62.04%), Query Frame = 3
Query:   75 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI 779
            MA+ VLSECG++PLP I+  PR+    N +K R   S  S      PL    G  SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                        PLYW AQGTMFWALFVLGHDCGHGSFSND KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES HP+SEKI
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKI 222          

HSP 2 Score: 42.3578 bits (98), Expect = 2.447e-74
Identity = 24/47 (51.06%), Postives = 27/47 (57.45%), Query Frame = 2
Query:  779 YRTLDSATRFLRFKI-LFPACISFYLWSXSPGKSGSTL-TLHDLFVP 913
            Y TLD  TRF RF + L      FYLW+ SPGK GS      DLF+P
Sbjct:  223 YNTLDKPTRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLP 269          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.050e-71
Identity = 146/263 (55.51%), Postives = 159/263 (60.46%), Query Frame = 3
Query:   78 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYPF 848
            A WVLSECGL+PLP I+ RPR G      N  K R L   KS  +L       S   S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                        PLYW  QGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES HPLSEKI   L  V +    S  F +LAYPF
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPFPMLAYPF 260          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.634e-67
Identity = 136/259 (52.51%), Postives = 148/259 (57.14%), Query Frame = 3
Query:   75 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYPF 848
            MAS VLSECG +PLP  +P+  T    +          L      L    G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                        PLYW AQGTMFWALFVLGHDCGHGSFSND +LNSV GHLLHSSILVPYHGWRISHRTHHQNHGHVENDES HPL E I   L    Q F  +  F +LAYPF
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPF 239          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.463e-60
Identity = 122/208 (58.65%), Postives = 130/208 (62.50%), Query Frame = 3
Query:  243 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYPF 848
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                        PLYW AQGTMFWALFVLGHDCGHGSFSND +LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES HP+SEKI   L    + F  +    +LAYPF
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYKSLDKPTRFFRFTLPLVMLAYPF 204          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.334e-55
Identity = 88/135 (65.19%), Postives = 100/135 (74.07%), Query Frame = 3
Query:  375 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI 779
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                         +Y   QGTMFWALFVLGHDCGHGSFS+   LNS+VGH+LHSSILVPYHGWRISHRTHHQNHGH+E DES  PL+EKI
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKI 159          

HSP 2 Score: 41.2022 bits (95), Expect = 3.334e-55
Identity = 22/55 (40.00%), Postives = 30/55 (54.55%), Query Frame = 2
Query:  761 PVV*ENYRTLDSATRFLRFKILFPACI-SFYLWSXSPGKSGSTLTLHDLFVPVRE 922
            P+  + Y+ LDS TR +RF + FP  +   YL+S SPGK GS    +    P  E
Sbjct:  154 PLTEKIYKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSE 208          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.726e-54
Identity = 91/135 (67.41%), Postives = 98/135 (72.59%), Query Frame = 3
Query:  375 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI 779
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYW AQGT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS ILVPYHGWRISHRTHHQNHGHVENDES  PL EK+
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL 157          

HSP 2 Score: 34.6538 bits (78), Expect = 4.726e-54
Identity = 19/47 (40.43%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  779 YRTLDSATRFLRFKILFPA-CISFYLWSXSPGKSGSTLTLH-DLFVP 913
            Y+ L  +TR LR+ +  P      YLW  SPGK GS    +  LF P
Sbjct:  158 YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKEGSHFNPYSSLFAP 204          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.600e-51
Identity = 107/191 (56.02%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  375 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI-TGLWIVQQDF*DSKFFSLLAYPF-IFXXXXXXXXXXXXPYMTCLSQ*E-KDVITS 938
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                        PLYW AQGTMFWALFVLGHDCGHGSFSN  KLNS VGH+LHS ILVPY+GWRISHRTHHQNHGHVE DES  PL+EK+   L  + +    S  F + AYPF ++            PY    S  E K V+TS
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKEGSHFNPYSNLFSPGERKGVVTS 212          
BLAST of EY754291 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.310e-50
Identity = 91/135 (67.41%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  375 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESXHPLSEKI 779
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                        PLYWAAQGT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS ILVPYHGWRISHRTHHQNHGHVENDES  PL E++
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV 160          
The following BLAST results are available for this feature:
BLAST of EY754291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FAD3C_SESIN3.202e-7657.58Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN2.710e-7553.06Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_ARATH2.447e-7457.14Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_RICCO4.050e-7155.51Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3D_ARATH4.634e-6752.51Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA2.463e-6058.65Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_SOYBN3.334e-5565.19Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA4.726e-5467.41Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU1.600e-5156.02Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH2.310e-5067.41Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-H10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754291 ID=EY754291; Name=EY754291; organism=Citrus sinensis; type=EST; length=948bp
GTCCGGNATTCCACGCCCGACCCACGCGTCCGCTTCTGTCTTTTTTAACC
CTTTGAGGATTTTTCTGAGACCCAATGGCGAGTTGGGTTCTTTCAGAATG
TGGCTTAAAGCCTCTGCCTCATATTTTTCCGAGGCCAAGGACTGGAATCA
ATCCCTCAAAGGCCAGGTTTTTGCACTCAAAAAAGAGTTTAACAGATCTA
AAGCTCCCATTAGTTAAATGTTCGGGTGATTTTTCTAGAGACAGGAACTG
GGGTCTTAAAGTTAGTGCTCCACTGAGGGTGGCACCACTTGAGGGGGAGG
ATGAAGAAGAGAGAATCAACGGTGTTAATGGGATTGGAAATAACAAAGGA
GTCGAAGAAGAAGAGGGATCTGAATTTGATCCTGGGGCTCCTCCTCCTTT
CAAGCTAGCTGATATTAGAGCTGCTATTCCAAAGCATTGTTGGGTTAAGG
ATCCTTGGAAGTCTATGAGCTATGTTGTTAGAGATGTTGTGGTGGTTTTT
GGCTTGGCTGCTGCTGCTGCTTATTTGAACAATTGGGTTGTTTGGCCTTT
GTACTGGGCTGCTCAGGGAACCATGTTTTGGGCTCTTTTTGTGCTCGGTC
ATGATTGTGGTCATGGAAGCTTTTCAAATGATCACAAGTTGAATAGTGTG
GTGGGGCATCTGCTGCATTCTTCAATTCTGGTTCCTTATCATGGATGGAG
AATTAGCCACAGGACTCATCATCAAAACCATGGGCATGTTGAGAATGATG
AATCCTGNCACCCGTTGTCTGAGAAAATTACAGGACTTTGGATAGTGCAA
CAAGATTTTTGAGATTCAAAATTCTTTTCCCTGCTTGCATATCCTTTTAT
CTTTGGAGTANGAGTCCGGGGAAGTCTGGTTCTACTTTGACCCTACATGA
CCTGTTTGTCCCAGTGAGAGAAGGATGTGATCACTTCACATATGCTGG
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