EY754290

Overview
NameEY754290
Unique NameEY754290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.779e-77
Identity = 152/243 (62.55%), Postives = 174/243 (71.60%), Query Frame = 3
Query:    3 YRL*MPVTGEFPQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS-----XXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPSMDPQRMGALVPSQEGENKSGPEK-------HXTAQHYPYRPPMPXTHG 695
            YR  MP TGE  QQNIKDRYYGVNDPVALKLL+KAGEMPSL PP+DESI+TLY+GG+D+R+TEQDLRD FYAHGEIE+I+M  Q+A AFVTYTTREGAEKAAEEL+NKLVIKG+RLKLMWGKPQ  +PE    DE  +Q  +AH GMLPR++IS                        YFNIP PP  +R  YPSMDPQRMGALV SQEG+ K GP++         + Q YP  PP P  HG
Sbjct:  179 YRHEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGKPQAPKPE---EDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQPASASYYFNIPAPPAAERTLYPSMDPQRMGALVESQEGDGKPGPQQAGQGQASSSSGQSYP-EPPPPYYHG 417          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: C3H40_ORYSJ (Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.601e-75
Identity = 147/223 (65.92%), Postives = 165/223 (73.99%), Query Frame = 3
Query:    3 YRL*MPVTGEFPQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLIS-----XXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPSMDPQRMGALVPSQEGENKSGPEKHXTAQ 656
            YR  MP TGE  QQNIKDRYYGVNDPVALKLL KAGEMPSL PP+DESI+TLY+GG++ RITEQDLRD FYAHGEIESI+M  Q+A AFVTYTTREGAEKAAEEL+NKLVIKG+RLKLMWGKPQ  +PE    DE  +Q  +AH GMLPR++IS                        YFNIP PP  +R  YPSMDPQRMGALV SQEG+ K GP++   AQ
Sbjct:  179 YRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGIRLKLMWGKPQAPKPE---DDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQQAPSGSYYFNIPAPPGAERTLYPSMDPQRMGALVKSQEGDGKPGPQQAAQAQ 398          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: C3H25_ARATH (Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.607e-67
Identity = 137/240 (57.08%), Postives = 166/240 (69.17%), Query Frame = 3
Query:    3 YRL*MPVTGEFPQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPPQ---QDRAYYPSMDPQRMGALVPSQE-----GENKSGPEKHXT-------AQHYPYRPP 677
            YR  MP TGE  QQNIKDRYYGVNDPVALKLL KAGEM +LE PED+SI+TLYVGG+++R+ EQD+RD FYAHGEIESI++  +KA AFVTYTTREGAEKAAEELSN+LV+ G RLKL WG+PQ  +P+ + S+   QQ ++AHSG+LPR++IS                   Y+  PPPPQ   QDR +YPSMDPQRMGA+  S+E      +N+       T        QH PY PP
Sbjct:  179 YRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVPKPDQDGSN---QQGSVAHSGLLPRAVIS--------QQQNQPPPMLQYYMHPPPPQPPHQDRPFYPSMDPQRMGAVSSSKESGSSTSDNRGASSSSYTMPPHGHYPQHQPYPPP 407          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: C3H4_ARATH (Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.272e-65
Identity = 130/231 (56.28%), Postives = 156/231 (67.53%), Query Frame = 3
Query:    3 YRL*MPVTGEFPQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPSMDPQRMGALVPSQEG------ENKSGPEKHXTAQHYPYRPP 677
            YR  MP TGE  QQNIKDRYYGVNDPVA+KLL KAGEM +LE P+DESIKTLYVGG+++RI EQD+RD FYAHGEIESI++   KA AFVTYT+REGAEKAA+ELSN+LVI G RLKL WG+P+  +      D   QQ  +AHSG+LPR++IS                   Y+  PPP  QD+ YYPSMDPQRMGA++ +QE        N +    +    H  Y PP
Sbjct:  179 YRHEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWGRPKPDQ------DGANQQGGVAHSGLLPRAVIS--------QQHNQPPPMQQYYMHPPPANQDKPYYPSMDPQRMGAVISTQEAGGSSTENNGASSSSYMMPPHQSYPPP 395          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: C3H53_ARATH (Zinc finger CCCH domain-containing protein 53 OS=Arabidopsis thaliana GN=At5g07060 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.909e-34
Identity = 92/227 (40.53%), Postives = 120/227 (52.86%), Query Frame = 3
Query:    3 YRL*MPVTGEFPQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRAYYPSMDPQRMGALVPSQEGENKSGPEKHXTAQHYPYRPPMP 683
            +R  MP TGE   QNI+DRYY VNDPVA+KLL KAGEM +LEPPEDESIKTLYVGG+++RI EQD+ D+FYA+GE+ESI++                    AE+                GK        +S    +QQ +IAH+G++ +                       Y+  PPPP  + ++YPSMD QRMGA   +QE +  S  E +     Y Y  PMP
Sbjct:  176 FRHEMPETGELSHQNIRDRYYSVNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV-------------------MAED----------------GK------YDQSGSNQQQQGSIAHTGLISQQ-------------QNQHSQMQQYYMQPPPP-NEYSHYPSMDTQRMGAAFSTQESDGSSTSENNRAYSSYSY--PMP 345          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: RBM22_XENTR (Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.358e-33
Identity = 85/229 (37.12%), Postives = 114/229 (49.78%), Query Frame = 3
Query:    3 YRL*MPVTGEFP--QQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR-----PEGESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFNIPPPP------------------------QQDRAYYPSMDPQRMGA 596
            YR   P   + P   QNIKDRYYG+NDPVA KLL +A  MP L+PPED+SI TLYVGG+   I+E +LR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R      +G S   ++ +      G LP                          ++PPPP                             +YPS DPQRMGA
Sbjct:  181 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLIVNGRRLNVKWGRSQAARGKERERDGSSDPGMKLEPVPGLPGALPPPPTEEESSANYFNLPPNGSAALVNISLPPPPGLSGPPPGYGPHMFPPMAPPPFLRAPGHIHYPSQDPQRMGA 409          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: RBM22_PONAB (Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.556e-32
Identity = 89/232 (38.36%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    3 YRL*MPVTGEFP--QQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRA----YYPSMDPQRMGA 596
            YR   P   + P   QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YPS DPQRMGA
Sbjct:  181 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: RBM22_MOUSE (Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.556e-32
Identity = 89/232 (38.36%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    3 YRL*MPVTGEFP--QQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRA----YYPSMDPQRMGA 596
            YR   P   + P   QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YPS DPQRMGA
Sbjct:  181 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: RBM22_MACFA (Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.556e-32
Identity = 89/232 (38.36%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    3 YRL*MPVTGEFP--QQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRA----YYPSMDPQRMGA 596
            YR   P   + P   QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YPS DPQRMGA
Sbjct:  181 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY754290 vs. ExPASy Swiss-Prot
Match: RBM22_HUMAN (Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.556e-32
Identity = 89/232 (38.36%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    3 YRL*MPVTGEFP--QQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFNIPPPPQQDRA----YYPSMDPQRMGA 596
            YR   P   + P   QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YPS DPQRMGA
Sbjct:  181 YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
The following BLAST results are available for this feature:
BLAST of EY754290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H49_ORYSJ2.779e-7762.55Zinc finger CCCH domain-containing protein 49 OS=O... [more]
C3H40_ORYSJ2.601e-7565.92Zinc finger CCCH domain-containing protein 40 OS=O... [more]
C3H25_ARATH2.607e-6757.08Zinc finger CCCH domain-containing protein 25 OS=A... [more]
C3H4_ARATH9.272e-6556.28Zinc finger CCCH domain-containing protein 4 OS=Ar... [more]
C3H53_ARATH2.909e-3440.53Zinc finger CCCH domain-containing protein 53 OS=A... [more]
RBM22_XENTR9.358e-3337.12Pre-mRNA-splicing factor RBM22 OS=Xenopus tropical... [more]
RBM22_PONAB3.556e-3238.36Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=... [more]
RBM22_MOUSE3.556e-3238.36Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=... [more]
RBM22_MACFA3.556e-3238.36Pre-mRNA-splicing factor RBM22 OS=Macaca fascicula... [more]
RBM22_HUMAN3.556e-3238.36Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-H09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754290 ID=EY754290; Name=EY754290; organism=Citrus sinensis; type=EST; length=923bp
CATATAGGCTTTAGATGCCTGTAACTGGGGAGTTCCCTCAGCAAAATATT
AAAGATCGTTACTATGGGGTGAACGATCCTGTTGCGCTGAAGCTACTTAA
CAAGGCAGGTGAGATGCCCTCCCTGGAACCTCCTGAGGATGAAAGCATTA
AAACTCTTTATGTTGGTGGGGTTGATGCAAGAATCACTGAGCAAGATTTA
AGGGATAACTTTTATGCCCATGGTGAGATTGAATCCATAAAGATGCATCC
ACAAAAAGCATTTGCTTTTGTAACCTACACAACAAGAGAAGGTGCAGAGA
AGGCTGCAGAAGAGCTCTCTAACAAACTTGTCATAAAGGGTCTTAGGCTG
AAGCTCATGTGGGGTAAGCCCCAGACACAAAGGCCTGAGGGTGAAAGCTC
AGATGAAGTGAGACAACAGGCTGCGATTGCTCATAGTGGGATGTTGCCTC
GTTCACTGATATCGCAGCAGCAGAATCAATATCAGCAACCTGGTGCTCAG
GACCAAGCTGCACCCACCCCCTACTTCAATATTCCTCCTCCACCTCAGCA
GGATAGAGCCTATTATCCATCAATGGATCCTCAAAGAATGGGAGCTCTTG
TCCCATCCCAGGAAGGTGAGAACAAGTCTGGTCCAGAGAAGCATNGCACA
GCACAGCATTATCCCTATCGACCACCCATGCCGNCTACACATGGGCAATA
TCCGCAGCAGCTTTATCCGCCATATGGGTATATGCCACCGATGGCGCCCT
ACCAGCAGTACCCTTCACCCTATCAGTCTTCAAATGCCCGGNNCTATGCT
NCACCATTTGATGCACAGTATCAGCATCAGCATCAGCATCCTGTGCCACA
GACATCTGCACCCCCTTCATTGGCACGNCAGGGACTACACCCGTTCATCT
GCCCATNGACTCTGGTCCCCAGT
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