EY754280

Overview
NameEY754280
Unique NameEY754280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.890e-47
Identity = 106/198 (53.54%), Postives = 126/198 (63.64%), Query Frame = 3
Query:  222 NPNFVNFQHQN----PRPLN---PKNLLYR-LNCNKLKSSGEETKSVVNTXXXXXXXXXXXXXXXXXXXXXXXXXXALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSP 791
            NPNF+ F  ++    P+ LN     NL  R L+C  +K S E TKS  +                             P WL+ TSDDA+TV  A+ +SLAFR F+AEPRYIPSLSMYPTFDVGDR+VAEKV+YYFRKPC+NDIVIFKSPPVLQEV YTD DVFIKR+VAKEGD V V   KL+VNG    + ++  P
Sbjct:   30 NPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSCYGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRL---FPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEP 224          
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  435 GW----LNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSPFLYMTQLLY 818
            GW    LNI S+DAK    A+ +SL FRS +AEP+ IPS SM PT DVGDR++AEKV+Y+FRKP  +DIVIFK+PP+L E  Y+  DVFIKR+VA EGD V V + KL+VN +V+ + ++  P  Y  + ++
Sbjct:  174 GWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMF 305          
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.761e-31
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 3
Query:  435 GWLN----ITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVL---QEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSPFLYMTQLLY 818
            GW+N    + S+DAK    A+ +S+ FRS +AEP+ IPS SMYPT D GDR++AEKV+Y+FRKP  +DIVIFK+PP+L    E  Y+ +DVFIKR+VA EGD V VR+ KL VN  V+ + ++  P  Y  + ++
Sbjct:  144 GWVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMF 278          
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  429 LPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSPFLY 800
            +P       ++   ++ ALV++L  R FVAEPRYIPS SM PT + GDR+V EKV+Y+F  P   DI++F  P +LQ   Y     FIKRV+A  G  V V    +  +G    + Y+  P  Y
Sbjct:    6 IPSPWQFIKENIPLLMVALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQY 129          
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 43/109 (39.45%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  465 KTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSP 791
            KT+  ++V++L  R+FVAE RYIPS SM PT +V DR++ EK++Y+F  P   DI++F     L++   + ++ FIKRV+   G+ V V   ++++NG    + Y+ SP
Sbjct:   33 KTIGLSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSP 141          
BLAST of EY754280 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.887e-17
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  438 WLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKRVVAKEGDXVXVRERKLIVNGSVEMKIYLXSPFLY 800
            WL +     KT++ A+++++  R+FVAE RYIPS SM PT  + DR++ EK++Y  R P   +IV+F     L+   +   D FIKR++   GD V V +  + VNG +  + Y+ +P  Y
Sbjct:   21 WLEL----GKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNF--HDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAY 135          
The following BLAST results are available for this feature:
BLAST of EY754280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PLSP1_ARATH4.890e-4753.54Chloroplast processing peptidase OS=Arabidopsis th... [more]
TPP2_ARATH5.803e-3253.03Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH3.761e-3150.37Thylakoidal processing peptidase 1, chloroplastic ... [more]
LEP1_SYNY32.796e-1840.32Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP_PHOLA1.062e-1739.45Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
LEP2_SYNY36.887e-1737.19Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-G11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754280 ID=EY754280; Name=EY754280; organism=Citrus sinensis; type=EST; length=895bp
GAGTGGAGATGATGATATCTCTAAATCTCCTACCTACGCTGCCTTCCCTT
CAGAACCCTAATTTCACTTCTACCCAATCTTCCAACCCTCTCAAAAACCC
TAATTTTGCTGCAAAACCTTTTTCCAAGTCCCTCAAAAACCCTTATTTCA
CAATCCTCAACCTGCACCCAAAATCAAACCCACCCCAGTTTTCACGCACC
CGTTGGCCCTTTGTCTCTATAAATCCCAACTTTGTTAACTTTCAGCACCA
AAATCCTAGGCCCTTGAACCCCAAAAATTTACTTTACAGACTGAACTGTA
ATAAATTGAAAAGCTCCGGGGAAGAGACCAAATCAGTTGTTAATACTGGT
AGTGGTGGAGGCGGCGGCGGCGACGGCGGAGGTGGTGACGGTAGCGATGA
TGAAGAGGCGGAGGGGCAAAGTGGGGCATTGCCAGGATGGTTGAATATCA
CTTCTGATGATGCAAAAACAGTTTTGGCGGCGCTGGTTATTTCACTTGCT
TTTCGGTCGTTTGTGGCCGAGCCAAGGTACATTCCTTCGTTGTCGATGTA
TCCTACGTTTGATGTTGGAGATCGAATTGTTGCAGAAAAGGTTACCTACT
ATTTCAGAAAGCCATGCTCAAATGATATAGTAATTTTCAAAAGTCCACCG
GTTCTTCAGGAAGTANGATACACTGATGATGATGTCTTTATTAAACGAGT
TGTTGCCAAGGAAGGCGATNGTGTANAGGTTCGTGAAAGGAAACTTATAG
TTAATGGGAGTGTAGAAATGAAGATATATCTGGNNAGCCCCTTCTTATAC
ATGACACAATTACTGTACCGAGAAACTCGTCTTTGTATGGGTGAAATCGA
AATACAGTTATGATCGCATGGGGCCCTCCCTGCAGATATCATAGA
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