EY754254

Overview
NameEY754254
Unique NameEY754254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.170e-50
Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = 1
Query:  307 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            +L  AREAVNEVQVV DSSW+ LVI SE PVLV+FWAPWCGPCRMIAP I+ELAKEYAGK+ C+KLNTD+SPN ATKYGIRSIPTVLFFKNGE+K+S+IGAVPK+TLS  ++KY+
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.988e-47
Identity = 96/185 (51.89%), Postives = 127/185 (68.65%), Query Frame = 1
Query:  109 MAMKNCFQVSSVYSTRAGVVQCY----QPFSSVKKIHLPIGNGLNKXXXXXXXXXXXXXXXXXXXXXXXXILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            MA++NC Q+S+  S     V+ +    QP S   K+++P   GL +                        ++CKA EAV EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD++P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL+ +++KY+
Sbjct:    1 MAIENCLQLSTSASVGTVAVKSHVHHLQPSS---KVNVPTFRGLKRSFPALSSSVSSSSPRQFRYSS---VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.457e-44
Identity = 80/113 (70.80%), Postives = 96/113 (84.96%), Query Frame = 1
Query:  313 CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            C+    V+EV V  + +W+++V+ SE PVLVEFWAPWCGPCRMIAP I+ELAKEY GK+ C K+NTDDSPNIAT YGIRSIPTVL FKNGEKKES+IGAVPK+TL++ +DKYV
Sbjct:   58 CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.903e-44
Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 1
Query:  310 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            +C+++ AV+EV V  + +W+ LV++ E PVLVEFWAPWCGPCRMIAP I+ELAK+YAGK+ C K+NTDDSPN+A+ YGIRSIPTVL FK GEKKES+IGAVPKSTL++ +DKY+
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.233e-43
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 1
Query:  310 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            +CK +  V+EV V  + +W+N+VI+ E+PVLVEFWAPWCGPCRMIAP I+ELAK+Y GK+ C K+NTDD PNIA+ YGIRSIPTVL FK+GEKKES+IGAVPK+TL + +DKY+
Sbjct:   60 VCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.476e-38
Identity = 64/115 (55.65%), Postives = 95/115 (82.61%), Query Frame = 1
Query:  307 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            ++C+A+E   ++QVV DS+W++LV+ +  PV+V+FWAPWCGPC+MI P + +LA+ Y GK+  +KLNTD+SPN   +YG+RSIPT++ F  GEKK++IIGAVPK+TL+S+LDK++
Sbjct:   71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.744e-38
Identity = 64/116 (55.17%), Postives = 95/116 (81.90%), Query Frame = 1
Query:  307 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 654
            I+C+A++    + +V DS+WE+LV+ ++ PV+V+FWAPWCGPC+MI P + ELA++Y GK+  FKLNTDDSP    KYG+RSIPT++ F  GEKK++IIGAVPK+TL++++DK+++
Sbjct:   62 IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFLQ 177          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.254e-36
Identity = 67/118 (56.78%), Postives = 93/118 (78.81%), Query Frame = 1
Query:  307 ILCKARE---AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            I C+A++   A  EV  ++DS W+  V+ S+ PVLVEFWAPWCGPCRMI P +++LAK++AGK   +K+NTD+SPN A +YGIRS+PTV+ FK GEKK+SIIGAVP+ TL  T+++++
Sbjct:   74 IACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-34
Identity = 59/115 (51.30%), Postives = 92/115 (80.00%), Query Frame = 1
Query:  307 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            ++C+A++    + VV DS+W++LV+ ++ PV V+FWAPWCGPC+MI P + ELA++YAG+   +KLNTD+SP    +YG+RSIPT++ F NGEKK++IIGAV K TL+++++K++
Sbjct:   65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of EY754254 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 3.045e-34
Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  337 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 651
            E   V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+SPN+A++YGIRSIPT++ FK G+K E+IIGAVPK+T+  T++KY+
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
The following BLAST results are available for this feature:
BLAST of EY754254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TRXM_PEA5.170e-5078.26Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL6.988e-4751.89Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_ORYSJ1.457e-4470.80Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_MAIZE1.903e-4468.42Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT1.233e-4367.54Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM2_ARATH3.476e-3855.65Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA7.744e-3855.17Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM4_ARATH3.254e-3656.78Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM1_ARATH1.367e-3451.30Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE3.045e-3459.05Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-E05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754254 ID=EY754254; Name=EY754254; organism=Citrus sinensis; type=EST; length=798bp
ATCGCCCATAAGAGAAGGCCACATCTTCTTCTATACTCCTATCAATACTC
TTCAACTTGCTGTGAACAGAAACATTCCCAGCAAAAGAAAAAAGAAAGAC
AGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGTGTATAGC
ACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTGTAAAGAA
GATTCATTTGCCGATTGGTAACGGGTTGAATAAATCCAATCTCTCATTCA
CTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAGCAGAAAC
TCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTCAAGTGGT
GACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAACCCTGTGC
TTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGATAGCGCCA
GCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCTGTTTCAA
GCTCAACACAGATGATTCCCCCAACATTGCAACTAAGTATGGAATTAGAA
GCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGAGAGCATC
ATTGGTGCTGTTCCCAAATCTACTTTGTCCTCTACTTTAGATAAATATGT
AGAATGAATGGCCAAAAATCACATTTACATGTTGTATGAATGACATATTA
ATCCAAGTTTATGTTTCATTTCAAATGTAGAAATCTCTTTCCTTCATGTG
TAAATATCGTCATGAANGTGAAATTTTCCTGGAAAAAAAAAAAAAAAA
back to top