EY754234

Overview
NameEY754234
Unique NameEY754234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 7.770e-98
Identity = 151/190 (79.47%), Postives = 173/190 (91.05%), Query Frame = 3
Query:   21 VRWHLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 590
            V WH +L KFRP+ + RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLG+ FWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MPD+A
Sbjct:  253 VNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPDYA 442          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 4.264e-96
Identity = 149/189 (78.84%), Postives = 171/189 (90.48%), Query Frame = 3
Query:   21 VRWHLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDH 587
            V WH +L KFR + + RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLG+ FWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MP++
Sbjct:  258 VNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPNY 446          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.911e-86
Identity = 136/171 (79.53%), Postives = 152/171 (88.89%), Query Frame = 3
Query:   27 WHLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAP 539
            WH DL KFRP+ + RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLG+ FWMSTFTMVHHTAP+IPFK   EWN AQAQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YLNEASWNWRLMKTIMTVC +YDKE++     +  P
Sbjct:  254 WHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKSLCCLRRTCP 424          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.287e-84
Identity = 134/187 (71.66%), Postives = 162/187 (86.63%), Query Frame = 3
Query:   30 HLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 590
            H +L  FR + +KR  ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLG+ FWMSTFT+VHHTAPHIPFKS  EWNAAQAQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YLN+   NWRLM+TIMT CHIYDK+ NYV+F++  P++SQPI+  K VMPD+A
Sbjct:  261 HFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.069e-58
Identity = 94/168 (55.95%), Postives = 126/168 (75.00%), Query Frame = 3
Query:   30 HLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQL 533
            H  LS F      +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL + FWMSTFT+VHHT P I F+   +W+AA+AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S  IPSYNL+ AH S+++NWG +L E ++NW+LM+ I   CH+YD E  Y  F  L
Sbjct:  181 HFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSL 348          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.151e-39
Identity = 70/151 (46.36%), Postives = 103/151 (68.21%), Query Frame = 3
Query:   30 HLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL-NEASWNWRLMKTIM 479
            H D +KF     ++VK S   V    AI +P ++L  G+ G++K+W++PWL F FWMSTFT++HHT   IPF+ P +W+ A++QL+GTVHC+Y +W E LCH+INVHIPHH++  IP YNL+      ++  G+YL  E  ++W LMK ++
Sbjct:  180 HFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYLYPECDFSWGLMKQVV 330          
BLAST of EY754234 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 3
Query:   27 WHLDLSKFRPNPIKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGFFFWMSTFTMVHHTAPH--IPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNE 443
            +H D   F PN  K V  S  C  A +A+   L  +  G    +K + +P+LG   W+   T +HH      +P+    EW+  +  L  T+  DY  WI  + H+I  H+ HH+ P+IP Y+L  A ++ +   GKY  E
Sbjct:  264 FHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFV-IGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDYG-WINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYRE 401          
The following BLAST results are available for this feature:
BLAST of EY754234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FAD6C_BRANA7.770e-9879.47Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH4.264e-9678.84Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SOYBN8.911e-8679.53Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_SPIOL1.287e-8471.66Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY32.069e-5855.95Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL2.151e-3946.36Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
FAD3C_SESIN9.416e-1131.91Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-C09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754234 ID=EY754234; Name=EY754234; organism=Citrus sinensis; type=EST; length=646bp
ATTCACGCCTCGACCCACGCGTCCGCTGGCACTTGGATTTGAGCAAGTTC
AGGCCAAATCCAATTAAAAGGGTGAAGATAAGTTTGGCATGTGTTTTTGC
ATTTATGGCAATTGGATGGCCTCTAATTATGTTGAAGACAGGAATTGCGG
GATGGATAAAGTACTGGTTGATGCCATGGTTGGGCTTTTTCTTCTGGATG
AGTACTTTCACTATGGTGCATCATACGGCTCCTCACATTCCTTTCAAATC
TCCGAATGAGTGGAATGCAGCCCAAGCCCAGCTTAATGGGACAGTTCATT
GTGATTACCCTAAATGGATCGAGATTCTCTGCCACAACATCAATGTCCAC
ATCCCCCATCATATCTCGCCGAGAATACCAAGCTATAATTTGAAGGCAGC
TCATAAATCTATCCAACAGAATTGGGGGAAGTATTTGAACGAGGCTTCAT
GGAATTGGCGTTTGATGAAGACAATAATGACAGTATGCCACATCTATGAC
AAGGAGCAAAATTATGTGGCGTTTGACCAACTTGCCCCCAAAGATTCTCA
ACCAATTACATTCCTTAAAAGTGTGATGCCTGATCATGCTTGAATTTTTG
CCACTTCCTCAATCCATCTCTTTTCAGTTAAAAAAAAAAAAAAAAA
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