EY754233

Overview
NameEY754233
Unique NameEY754233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.176e-100
Identity = 155/190 (81.58%), Postives = 175/190 (92.11%), Query Frame = 3
Query:   60 VRWHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 629
            V WHF+L KFRP+ V RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MPD+A
Sbjct:  253 VNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPDYA 442          
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 1.743e-98
Identity = 153/189 (80.95%), Postives = 173/189 (91.53%), Query Frame = 3
Query:   60 VRWHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDH 626
            V WHF+L KFR + V RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK  MP++
Sbjct:  258 VNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPNY 446          
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.642e-88
Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 3
Query:   66 WHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAP 578
            WHFDL KFRP+ V RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK   EWN AQAQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YLNEASWNWRLMKTIMTVC +YDKE++     +  P
Sbjct:  254 WHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKSLCCLRRTCP 424          
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.259e-87
Identity = 138/187 (73.80%), Postives = 164/187 (87.70%), Query Frame = 3
Query:   69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 629
            HF+L  FR + VKR  ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS  EWNAAQAQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YLN+   NWRLM+TIMT CHIYDK+ NYV+F++  P++SQPI+  K VMPD+A
Sbjct:  261 HFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447          
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.883e-60
Identity = 97/168 (57.74%), Postives = 128/168 (76.19%), Query Frame = 3
Query:   69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQL 572
            HF LS F      +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+   +W+AA+AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S  IPSYNL+ AH S+++NWG +L E ++NW+LM+ I   CH+YD E  Y  F  L
Sbjct:  181 HFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSL 348          
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 71/151 (47.02%), Postives = 106/151 (70.20%), Query Frame = 3
Query:   69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL-NEASWNWRLMKTIM 518
            HFD +KF   + ++VK S   V    AI +P ++L  G+ G++K+W++PWL +HFWMSTFT++HHT   IPF+ P +W+ A++QL+GTVHC+Y +W E LCH+INVHIPHH++  IP YNL+      ++  G+YL  E  ++W LMK ++
Sbjct:  180 HFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYLYPECDFSWGLMKQVV 330          
The following BLAST results are available for this feature:
BLAST of EY754233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FAD6C_BRANA3.176e-10081.58Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH1.743e-9880.95Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SOYBN3.642e-8881.87Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_SPIOL5.259e-8773.80Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY31.883e-6057.74Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL5.697e-4147.02Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-012-C08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754233 ID=EY754233; Name=EY754233; organism=Citrus sinensis; type=EST; length=685bp
GAACTCTTTGGTNCAAAACCCCAGTCTCTTTGTNCCGGNATTACCGCCTC
GACCCACGCGTCCGCTGGCACTTTGATTTGAGCAAGTTCAGGCCAAATCG
AGTTAAAAGGGTGAAGATAAGTTTGGCATGTGTTTTTGCATTTATGGCAA
TTGGATGGCCTCTAATTATGTTGAAGACAGGAATTGCGGGATGGATAAAG
TACTGGTTGATGCCATGGTTGGGCTATCACTTCTGGATGAGTACTTTCAC
TATGGTGCATCATACGGCTCCTCACATTCCTTTCAAATCTCCGAATGAGT
GGAATGCAGCCCAAGCCCAGCTTAATGGGACAGTTCATTGTGATTACCCT
AAATGGATCGAGATTCTCTGCCACAACATCAATGTCCACATCCCCCATCA
TATCTCGCCGAGAATACCAAGCTATAATTTGAAGGCAGCTCATAAATCTA
TCCAACAGAATTGGGGGAAGTATTTGAACGAGGCTTCATGGAATTGGCGT
TTGATGAAGACAATAATGACAGTATGCCACATCTATGACAAGGAGCAAAA
TTATGTGGCGTTTGACCAACTTGCCCCCAAAGATTCTCAACCAATTACAT
TCCTTAAAAGTGTGATGCCTGATCATGCTTGAATTTTTGCCACTTCCTCA
ATCCATCTCTTTTCAGTTAAAAAAAAAAAAAAAAA
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