EY754233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 364.385 bits (934), Expect = 3.176e-100 Identity = 155/190 (81.58%), Postives = 175/190 (92.11%), Query Frame = 3 Query: 60 VRWHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 629 V WHF+L KFRP+ V RVKISLACVFAFMA+GWPLI+ K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK MPD+A Sbjct: 253 VNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPDYA 442
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 358.607 bits (919), Expect = 1.743e-98 Identity = 153/189 (80.95%), Postives = 173/189 (91.53%), Query Frame = 3 Query: 60 VRWHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDH 626 V WHF+L KFR + V RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP WIEILCH+INVHIPHHISPRIPSYNL+AAH+SIQ+NWGKY N A+WNWRLMKTIMTVCH+YDKE+NY+ FD+LAP++SQPITFLK MP++ Sbjct: 258 VNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYTNLATWNWRLMKTIMTVCHVYDKEENYIPFDRLAPEESQPITFLKKAMPNY 446
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 324.324 bits (830), Expect = 3.642e-88 Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 3 Query: 66 WHFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAP 578 WHFDL KFRP+ V RVKISLACVFAF+AIGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK EWN AQAQLNGTVHCDYPKWIEILCH+INVHIPHHISPRIPSYNL+AAHKS+Q+NWG+YLNEASWNWRLMKTIMTVC +YDKE++ + P Sbjct: 254 WHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCQVYDKEKSLCCLRRTCP 424
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 5.259e-87 Identity = 138/187 (73.80%), Postives = 164/187 (87.70%), Query Frame = 3 Query: 69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQLAPKDSQPITFLKSVMPDHA 629 HF+L FR + VKR ISLA VFAFM IGWPLI+ KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS EWNAAQAQL+GTVHCDYP+WIEILCH+I+VHIPHHISP+IPSYNL+AA++S+ +NWG+YLN+ NWRLM+TIMT CHIYDK+ NYV+F++ P++SQPI+ K VMPD+A Sbjct: 261 HFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGNYVSFEKAVPEESQPISIPKRVMPDYA 447
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.883e-60 Identity = 97/168 (57.74%), Postives = 128/168 (76.19%), Query Frame = 3 Query: 69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYLNEASWNWRLMKTIMTVCHIYDKEQNYVAFDQL 572 HF LS F +VK+S+A VF F AI +P +++ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+ +W+AA+AQLNGTVHCDYP+W+E+LCH+INVHIPHH+S IPSYNL+ AH S+++NWG +L E ++NW+LM+ I CH+YD E Y F L Sbjct: 181 HFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYERTFNWQLMQQISGQCHLYDPEHGYRTFGSL 348
BLAST of EY754233 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41 Identity = 71/151 (47.02%), Postives = 106/151 (70.20%), Query Frame = 3 Query: 69 HFDLSKFRPNRVKRVKISLACVFAFMAIGWPLIMLKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKWIEILCHNINVHIPHHISPRIPSYNLKAAHKSIQQNWGKYL-NEASWNWRLMKTIM 518 HFD +KF + ++VK S V AI +P ++L G+ G++K+W++PWL +HFWMSTFT++HHT IPF+ P +W+ A++QL+GTVHC+Y +W E LCH+INVHIPHH++ IP YNL+ ++ G+YL E ++W LMK ++ Sbjct: 180 HFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRWGEFLCHDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEYLYPECDFSWGLMKQVV 330 The following BLAST results are available for this feature:
BLAST of EY754233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY754233 ID=EY754233; Name=EY754233; organism=Citrus sinensis; type=EST; length=685bpback to top |