EY754209 | Citrus Genome Database

Overview


Name	EY754209
Unique Name	EY754209
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	904

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.190e-76
Identity = 128/169 (75.74%), Postives = 142/169 (84.02%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + RVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLSNMYQR DMITPGVDAQG PLDPRKIQ               K+GEIESLN+CDNLADHM+GNVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +S
Sbjct:    9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVS 177

HSP 2 Score: 29.6462 bits (65), Expect = 1.190e-76
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAEHLASIFGTEK
Sbjct:    1 MAEHLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.024e-76
Identity = 128/168 (76.19%), Postives = 144/168 (85.71%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI 630
            F   + RVNCPFYFKIGACRHGDRCSRLH KPSVSPTLLLSNMY R DMITPG+DAQGNP+DP KIQ              +KYGEIESL+VCDN ADHM+GNVYVQFREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNFMH+K I
Sbjct:    9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEI 176

HSP 2 Score: 29.6462 bits (65), Expect = 2.024e-76
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAEHLASIFGTEK
Sbjct:    1 MAEHLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.884e-75
Identity = 126/169 (74.56%), Postives = 141/169 (83.43%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + RVNCPFYFKIGACRHGDRCSRLH +P++SPTLLLSNMYQR DMITPGVD QG PLDP KIQ              NK+GE+ESLNVCDNLADHM+GNVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+IS
Sbjct:    9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQIS 177

HSP 2 Score: 29.6462 bits (65), Expect = 2.884e-75
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAEHLASIFGTEK
Sbjct:    1 MAEHLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.480e-73
Identity = 120/168 (71.43%), Postives = 141/168 (83.93%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI 630
            F   + RVNCPFYFKIGACRHGDRCSRLH +P+VSPT++L+NMYQR DMITPGVDAQG P+DP K+Q              +K+GE+E+LNVCDNLADHM+GNVYVQFREEEQA  A  +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNFMH+K+I
Sbjct:    9 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQI 176

HSP 2 Score: 29.6462 bits (65), Expect = 4.480e-73
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAEHLASIFGTEK
Sbjct:    1 MAEHLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.698e-47
Identity = 88/172 (51.16%), Postives = 107/172 (62.21%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMY---QRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y   Q       G     N  D    +              +KYGEIE +NVCDNL DH+VGNVY++FR E  A +A   L+ R++ GRP+  + SPVTDFREA CRQYE   C R G+CNFMHLK IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180

HSP 2 Score: 27.335 bits (59), Expect = 1.698e-47
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 182.57 bits (462), Expect = 4.907e-47
Identity = 88/170 (51.76%), Postives = 110/170 (64.71%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+  L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPIS 178

HSP 2 Score: 27.335 bits (59), Expect = 4.907e-47
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 4.907e-47
Identity = 88/170 (51.76%), Postives = 110/170 (64.71%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+  L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPIS 178

HSP 2 Score: 27.335 bits (59), Expect = 4.907e-47
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 4.908e-47
Identity = 88/170 (51.76%), Postives = 110/170 (64.71%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+     +   D     +   ++Q                KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+  L+ R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPIS 178

HSP 2 Score: 27.335 bits (59), Expect = 4.908e-47
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.848e-46
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +NVCDNL DH+VGNVYV+FR EE A RA+  L+ R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPIS 178

HSP 2 Score: 27.335 bits (59), Expect = 1.848e-46
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

[Close]

BLAST of EY754209 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.848e-46
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 1

Query:  127 FRDRESRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQXXXXXXXXXXXXXXN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 633
            F   + +VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+         D     +   ++Q                KYGEIE +NVCDNL DH+VGNVYV+FR EE A RA+  L+ R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ IS
Sbjct:    9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPIS 178

HSP 2 Score: 27.335 bits (59), Expect = 1.848e-46
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2

Query:  104 MAEHLASIFGTEK 142
            MAE+LASIFGTEK
Sbjct:    1 MAEYLASIFGTEK 13

The following BLAST results are available for this feature:

BLAST of EY754209 vs. ExPASy Swiss-Prot

BLAST of EY754209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20


Match Name	E-value	Identity	Description
U2AFA_ARATH	1.190e-76	75.74	Splicing factor U2af small subunit A OS=Arabidopsi...	[more]
U2AFA_ORYSJ	2.024e-76	76.19	Splicing factor U2af small subunit A OS=Oryza sati...	[more]
U2AFB_ARATH	2.884e-75	74.56	Splicing factor U2af small subunit B OS=Arabidopsi...	[more]
U2AFB_ORYSJ	4.480e-73	71.43	Splicing factor U2af small subunit B OS=Oryza sati...	[more]
U2AF1_DROME	1.698e-47	51.16	Splicing factor U2af 38 kDa subunit OS=Drosophila ...	[more]
U2AF1_MOUSE	4.907e-47	51.76	Splicing factor U2AF 35 kDa subunit OS=Mus musculu...	[more]
U2AF1_HUMAN	4.907e-47	51.76	Splicing factor U2AF 35 kDa subunit OS=Homo sapien...	[more]
U2AF1_BOVIN	4.908e-47	51.76	Splicing factor U2AF 35 kDa subunit OS=Bos taurus ...	[more]
U2AF4_RAT	1.848e-46	50.59	Splicing factor U2AF 26 kDa subunit OS=Rattus norv...	[more]
U2AF4_MOUSE	1.848e-46	50.59	Splicing factor U2AF 26 kDa subunit OS=Mus musculu...	[more]

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Properties


Property Name	Value
Genbank description	CS12-C1-001-012-A06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY754209 ID=EY754209; Name=EY754209; organism=Citrus sinensis; type=EST; length=904bp
CAAAACCACTGCTCCCTTCTTTTCACTACATTCCTCCAAACCCCACGTAA
AAAAAACGCTGTCGTATTTGTGAATTTGGAGAGATTATATTTCGAAGCCT
GCGATGGCGGAGCACTTGGCGTCGATTTTCGGGACCGAGAAAGCAGGGTA
AACTGTCCGTTTTACTTCAAGATCGGCGCGTGCAGACACGGCGACCGATG
CTCGCGTCTCCACACGAAGCCGAGTGTCAGCCCCACGCTCTTGCTTTCGA
ACATGTATCAGCGGCTCGATATGATCACCCCCGGCGTCGACGCGCAGGGC
AACCCGCTTGACCCGCGCAAGATCCAAGAACACTTTGAGGATTTTTATGA
AGATTTGTTTGAGGAACTGAACAAATATGGTGAAATTGAGAGCCTGAACG
TCTGTGACAACCTAGCTGATCATATGGTCGGTAATGTTTATGTGCAGTTT
AGGGAGGAAGAACAAGCTGCCAGAGCACTTAAAAGTCTAAGTGGGAGATT
TTATGCTGGGCGTCCTATTATTGTTGACTTCTCTCCTGTAACGGACTTTA
GAGAAGCTACCTGTAGACAATATGAGGAGAATACATGCAATCGTGGTGGG
TACTGCAATTTTATGCACCTAAAAAGGATTAGCAGGGATTTGAGGCGCCA
GCTATTTGGTAGATATAGACGAAGACATAGCCGTAGCAGAAGCAGAAGTC
CTTACAGGCAGCGCAGCCATGAAGACCGCTCTCACAGTGGGAACGGTAGA
AGGTATGATGACAGGGACAAGTATTNATGAAGTCNGAGCAGGGAGCACAG
GAGCACAAGCCCTAGCCACCNGAGAGGGAGAGTANNAAGCCTGGTGGACG
CGGTATCCANCCCTGTCAGGAAGGCANTGAGGAAAACCTGCAAATTGAGC
GTGA