EY754126

Overview
NameEY754126
Unique NameEY754126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:254..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY754126 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.570e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   28 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 390
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of EY754126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.570e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-011-A07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754126 ID=EY754126; Name=EY754126; organism=Citrus sinensis; type=EST; length=832bp
TCTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGA
TGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAA
TCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCG
TCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACC
GTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACG
TGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATC
GGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTA
TGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTGAGTGG
ATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCG
GATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGC
AACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCT
ATCTAAAGNTTGGTTTTAAAATGCTGCTGACTAAAAGTAAACTAAAGACT
GTGATGTTTTTATATCATATAATTTAATAATTGTATGTGATGTGAGGATT
GCTAANCTGTGGGCGGAGATGAAGGTTGCNTGTTTTTGGGTTANGACATG
TTTTTGATTTCATTTTGTAAGACCAAGATCATCCCTTCGTGGACGGTCGT
GATGAGCATATATGTTTATTATAATAAATAGTTGCTTCTCTGAAAAAAAA
AAAAAAAAAAAAGGGCGGCCGCCTTNNGGTNC
back to top