GE213243 | Citrus Genome Database

Overview


Name	GE213243
Unique Name	GE213243
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	394

Libraries


Library Name	Type
BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9861	contig	Csv1_Contig9861:895..1288.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.210e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.210e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.210e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.210e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.210e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.210e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.210e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.210e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.210e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.210e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.211e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.211e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.211e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 7.211e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.397e-45
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.4337 bits (228), Expect = 9.397e-45
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.596e-44
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWD+KNMM AADPR GRYLT SAMFRGKMSTKEVDEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.8189 bits (229), Expect = 1.596e-44
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

BLAST of GE213243 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.711e-44
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 3

Query:   57 MWDAKNMMGAADPRFGRYLTVSAMFRGKMSTKEVDEQMINVRNKCSSYFVDWIPNNVK 230
            MWDAKNMM AADPR GRYLT SAMFRGKMSTKE DEQMINV+NK SSYFV+WIPNNVK
Sbjct:  293 MWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEADEQMINVQNKNSSYFVEWIPNNVK 350

HSP 2 Score: 92.4337 bits (228), Expect = 2.711e-44
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2

Query:  233 SVCDIPPRGLSMVSTFFGNSTSIQKMFRRVSEQFKAMFRRKAFLHWY 373
            SVCDIPPRGLSM STF GNSTSIQ+MFRRVSEQF AMFRRKAFLHWY
Sbjct:  352 SVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398

The following BLAST results are available for this feature:

BLAST of GE213243 vs. ExPASy Swiss-Prot

BLAST of GE213243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238


Match Name	E-value	Identity	Description
TBB6_MAIZE	7.210e-45	89.66	Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=...	[more]
TBB4_ORYSJ	7.210e-45	89.66	Tubulin beta-4 chain OS=Oryza sativa subsp. japoni...	[more]
TBB4_ELEIN	7.210e-45	89.66	Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P...	[more]
TBB2_ELEIN	7.210e-45	89.66	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P...	[more]
TBB1_ORYSJ	7.210e-45	89.66	Tubulin beta-1 chain OS=Oryza sativa subsp. japoni...	[more]
TBB8_MAIZE	7.211e-45	89.66	Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=...	[more]
TBB5_MAIZE	7.211e-45	89.66	Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=...	[more]
TBB6_ORYSJ	9.397e-45	89.66	Tubulin beta-6 chain OS=Oryza sativa subsp. japoni...	[more]
TBB1_WHEAT	1.596e-44	87.93	Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1...	[more]
TBB3_GOSHI	2.711e-44	87.93	Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV...	[more]

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Properties


Property Name	Value
Genbank description	92 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GE213243 ID=GE213243; Name=GE213243; organism=Citrus sinensis; type=EST; length=394bp
ATTACCAGGGTCCCGGCCGAGGTACCGTGCCTTGATTTTTTTTTTTTTTT
TTTTTTATGTGGGATGCCAAGAACATGATGGGTGCTGCCGACCCAAGGTT
TGGTCGTTACCTCACTGTTTCTGCCATGTTCAGGGGTAAAATGAGCACCA
AGGAAGTTGACGAGCAGATGATCAATGTTCGAAACAAATGCTCTTCCTAC
TTTGTGGATTGGATTCCAAACAATGTGAAGTTAGTGTTTGTGACATTCCT
CCCAGAGGTCTCTCCATGGTATCCACCTTCTTCGGGAACTCAACATCCAT
CCAAAAAATGTTCCGAAGAGTGAGTGAGCAATTCAAAGCTATGTTTAGGA
GAAAGGCCTTCCTTCACTGGTACCTGCCCGGGCGGCCGCTCGAA