GE213234

Overview
NameGE213234
Unique NameGE213234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:943..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213234 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.535e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = -1 
Query:   26 TPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXPDSEPXXXXXXXXXXXXXXRYAVTDMRKLANRMLFG 322
            TPP +R +A R+ AAK  LAAR+DS    P G+ G S R+E+ +KIEK  E            PD  P              +YAVT++R+L NR+ FG
Sbjct:  307 TPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKEVERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFG 405
The following BLAST results are available for this feature:
BLAST of GE213234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRP31_SCHPO2.535e-1139.39Pre-mRNA-processing factor 31 OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank description83 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213234 ID=GE213234; Name=GE213234; organism=Citrus sinensis; type=EST; length=346bp
ATTAGCGTGGTCGCGGCCGAGGTACACCAAATAGCATTCTATTAGCCAGC
TTTCTCATATCTGTTACAGCATATCTTTCTTTCATCTTCCTTAACCGTCG
ACCACCCCTCTTCTTTTTAGGCTCAGAATCAGGAACTGGAAGAGGTTTAG
GTTGCTTTGCAGGAGGAGGCTCTTGCCACTTTTCAATTTTCTTGTGAATC
TCTTCTCTGAATGACCTCCCAGCAGTTCCAGAAGGATCTCCTCTAGTAGA
ATCAACACGTGCTGCAAGTGTTGATTTTGCAGCCAAGAGTCGGCAGGCAC
GCATCCTTAGAGGTGGAGGTGTACCTGCCCGGGCGGCCGCTCGAAA
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