GE213223

Overview
NameGE213223
Unique NameGE213223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213223_ssr100 microsatellite GE213223_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:1..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213223 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 5.217e-73
Identity = 128/140 (91.43%), Postives = 134/140 (95.71%), Query Frame = 1
Query:  154 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYLPGRQ 573
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLY P R+
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYRE 152          
BLAST of GE213223 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.838e-72
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 1
Query:  163 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYLPGRQ 573
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLY P R+
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYRE 145          
BLAST of GE213223 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 1.678e-71
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 1
Query:  157 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYLPGR 570
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLY P R
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYR 141          
BLAST of GE213223 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.088e-70
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 1
Query:  163 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYLPGRQ 573
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLY P R+
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRE 146          
The following BLAST results are available for this feature:
BLAST of GE213223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_MAIZE5.217e-7391.43Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_PEA9.838e-7291.97Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU1.678e-7192.03Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG2_SOLTU1.088e-7091.24Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank description68 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213223 ID=GE213223; Name=GE213223; organism=Citrus sinensis; type=EST; length=573bp
ATTAGCGTGGTCGCGGCCGAGGTCTCGTCTACGGTCTATCGCTCCTCTCC
TCCTGTTCTTCTTCTTACACAAATCAAAGTCTCTCATTTTTCTTTTTCCT
TCTTTCTTTCTTTTTTCTGAAACAAAATGGCGGCGGCAGCAACGACAACA
AGGCCGGCTGTGCCGCTGCTGAAAGACGAGCTGGACATCGTGATCCCCAC
GATCCGAAACTTGGACTTCTTGGAGCAGTGGAGGCCGTTTTTTCAGGCCT
ATCATTTGATCATCGTTCAGGATGGTGACCCTTCGAAGACCATCAAAGTC
CCTGAGGGATTTGACTACGAGCTCTATAATCGTAACGATATTAACCGGAT
TCTGGGTCCCAAGGCTTCTTGCATATCCTTCAAGGACTCTGCCTGCAGGT
GCTTTGGCTACATGGTGTCCAAGAAGAAGTATGTTTACACCATTGATGAC
GATTGCTTTGTTGCTAAAGACCCATCTGGCAAAGAAATTAATGCACTGGA
GCAGCACATAAGGAACCTGCTGAGTCCATCCACCCCATTTTTCTTTAACA
CTCTGTACCTGCCCGGGCGGCAA
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