EY753958

Overview
NameEY753958
Unique NameEY753958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1564 contig Csv1_Contig1564:24..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_CAEEL (Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis elegans GN=dpyd-1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.328e-33
Identity = 76/177 (42.94%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  232 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWINA 747
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P +I+IASIM  YNKA W EL  + EE G D +E+N SCPHGM  + MG A GQ   +++E C W+ A
Sbjct:  544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVIASIMCVYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEICRWVRA 714          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_DANRE (Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio GN=dpyd PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.590e-33
Identity = 74/173 (42.77%), Postives = 102/173 (58.96%), Query Frame = 1
Query:  238 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            D+S+ + G++ PNPF + S PP T+  +++RAF++GWG  + KT  LD   V NV+PR  R      G+  G I G     + NIELIS++      K   +LKA +P  I+IASIM  YN+A W EL    +E+  DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  532 DISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTNVSPRIVR------GTTSGHIFGPGQGSFLNIELISEKTAAYWCKSVAELKADFPKNIIIASIMCSYNQADWTELAKMAQESQADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_MOUSE (Dihydropyrimidine dehydrogenase [NADP+] OS=Mus musculus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.124e-32
Identity = 76/173 (43.93%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  238 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK+ W EL    E +G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_RAT (Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.504e-32
Identity = 76/173 (43.93%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  238 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK  W EL    E +G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKNDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_CAEBR (Probable dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.271e-32
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  232 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWINA 747
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P +I++ASIM  YNK  W EL  + E  G D +E+N SCPHGM  + MG A GQ   +++E C W+ A
Sbjct:  554 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVVASIMCVYNKEDWIELATKSEAAGADILELNLSCPHGMGEKGMGLACGQSPEIVKEICRWVRA 724          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_PONAB (Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo abelii GN=DPYD PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.271e-32
Identity = 79/192 (41.15%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  217 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  513 ASVSAKPELPLFYTAIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_DICDI (Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.271e-32
Identity = 72/170 (42.35%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  238 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWINA 747
            D+S+ + G++ PNPF + S  P T+  +++R+F++GWG  V KT SLD   V NV+PR  R     +    GQ   + NIELIS++      K   +LK  +PDRI+IASIM  +NK  W +L    E +G D IE+N SCPHGM  + MG A GQ   L+   C W+ A
Sbjct:  530 DISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLVTNVSPRIVRGTTSGHHFGPGQG-AFLNIELISEKTCHYWCKAIGELKRDFPDRIVIASIMCGFNKEDWTQLAKMAEASGADGIELNLSCPHGMGEKGMGLACGQDTELVFHICQWVRA 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_HUMAN (Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sapiens GN=DPYD PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.579e-32
Identity = 79/192 (41.15%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  217 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  513 ASVSAKPELPLFYTPIDLVDISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_PIG (Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scrofa GN=DPYD PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.120e-31
Identity = 79/192 (41.15%), Postives = 108/192 (56.25%), Query Frame = 1
Query:  217 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            AS SA+P            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E +G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  513 ASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
BLAST of EY753958 vs. ExPASy Swiss-Prot
Match: DPYD_BOVIN (Dihydropyrimidine dehydrogenase [NADP+] OS=Bos taurus GN=DPYD PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.907e-30
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 1
Query:  217 ASASAEP------------DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPGRKMGAAXGQXCXLLEESCGWI 741
            AS SA+P            D+S+ +  L+  NPF + S  P T+ ++++RAF+ GW   + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YN+  W EL  + E +G DA+E+N SCPHGM  R MG A GQ   L+   C W+
Sbjct:  513 ASVSAKPELPLFYTPIDLVDISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNRNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 698          
The following BLAST results are available for this feature:
BLAST of EY753958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPYD_CAEEL1.328e-3342.94Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorh... [more]
DPYD_DANRE6.590e-3342.77Dihydropyrimidine dehydrogenase [NADP+] OS=Danio r... [more]
DPYD_MOUSE1.124e-3243.93Dihydropyrimidine dehydrogenase [NADP+] OS=Mus mus... [more]
DPYD_RAT2.504e-3243.93Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus ... [more]
DPYD_CAEBR3.271e-3241.24Probable dihydropyrimidine dehydrogenase [NADP+] O... [more]
DPYD_PONAB4.271e-3241.15Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo a... [more]
DPYD_DICDI4.271e-3242.35Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyos... [more]
DPYD_HUMAN5.579e-3241.15Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sa... [more]
DPYD_PIG2.120e-3141.15Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scr... [more]
DPYD_BOVIN8.907e-3039.58Dihydropyrimidine dehydrogenase [NADP+] OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-H05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753958 ID=EY753958; Name=EY753958; organism=Citrus sinensis; type=EST; length=872bp
AAATTATTATTAAGTCGAATTCATAAAGCTTCTCTCTGATCCCAAAAGAA
TCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTCCTTTTATCTCCAT
CCATGGCATCATTGAATTTGAATCAGATCATAAGCAACAGCAACACCTCC
TTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTAGTCGAATTGGGTT
GAGGGTTTTGGCTTCTGCTTCAGCTTCAGCAGAGCCAGACTTGAGTATTA
CAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTATCGGATCGGGTCCA
CCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTGATGAAGGCTGGGG
TGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCAAAAGTTATAAACG
TAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAATGGATCAGCCAAA
GGGCAAATTATTGGGTGGGAGAACATAGAACTCATTAGCGATCGGCCGCT
TGAAACAATGTTGAAAGAATTTAAACAATTAAAAGCATTGTATCCGGATA
GGATTCTCATTGCTTCAATTATGGAAGAGTATAACAAAGCTGCATGGGAG
GAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATGCAATAGAAGTTAA
TTTTTCATGTCCCCATGGCATGCCCGGACGTAAAATGGGGGCTGCTGNTG
GCCAANATTGTANGCTATTGGAAGAAAGTTGTGGTTGGATAAATGCAAAG
CTACTGTTCCTGTGTGGGGCAAGAGACTNCTAACATACTGACATTACAGA
GTGAGCTCTGCGTATGATGAAACTTGTGTTGACTTCTACTTTAGTTCAAA
TAGGTAGCNTTATTTGAAACTT
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