EY753554

Overview
NameEY753554
Unique NameEY753554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 5.331e-88
Identity = 146/185 (78.92%), Postives = 162/185 (87.57%), Query Frame = 2
Query:  113 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNTDPIFP +KLTGTDVGYPGGLWFDPL
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 205          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.096e-84
Identity = 142/185 (76.76%), Postives = 155/185 (83.78%), Query Frame = 2
Query:  113 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEGRRWADIIKPGCVNTDPIFP +KLTGTDVGYPGGLWFDPL
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPL 205          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.630e-45
Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  254 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  ++TLF++E I   + E RRW DI  PG VN DPIF Q+ L   +VGYPGG+ F+PL
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPL 192          

HSP 2 Score: 28.4906 bits (62), Expect = 1.630e-45
Identity = 17/41 (41.46%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  723 NGXLPMLAGMGAXVXHIYPGPGP---LTSHCSPG*SWHATV 836
            NG L MLA +G  + H   G GP   L  H S    WH T+
Sbjct:  207 NGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD--PWHNTI 245          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.125e-45
Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = 2
Query:  209 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF Q+ L   +VGYPGG+ F+PL
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPL 193          

HSP 2 Score: 28.8758 bits (63), Expect = 2.125e-45
Identity = 18/41 (43.90%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  723 NGXLPMLAGMGAXVXHIYPGPGP---LTSHCSPG*SWHATV 836
            NG L MLA +G  V H   G GP   L  H S    WH T+
Sbjct:  208 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD--PWHNTI 246          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.103e-35
Identity = 76/155 (49.03%), Postives = 95/155 (61.29%), Query Frame = 2
Query:  206 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTGTDVGYPGGLWFDPL 667
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  YF  ++T   V M    + E RRW DI  PG VN DPIF  + L   + GYPG + F+PL
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPL 172          

HSP 2 Score: 27.335 bits (59), Expect = 6.103e-35
Identity = 17/41 (41.46%), Postives = 20/41 (48.78%), Query Frame = 3
Query:  723 NGXLPMLAGMGAXVXHIYPGPGP---LTSHCSPG*SWHATV 836
            NG L MLA +G  V H   G GP   L  H +    WH T+
Sbjct:  186 NGRLAMLAFLGFLVQHNVHGKGPFENLQQHLAD--PWHNTI 224          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.578e-26
Identity = 72/197 (36.55%), Postives = 100/197 (50.76%), Query Frame = 2
Query:  128 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKL-------TGTDVGYPGGLWFDPL 667
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +       W+ A    G +  F+   TL   +++ +GW E +RW D   P   + +   P  +        TG + GYPGG +FDPL
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTG-EQGYPGGKFFDPL 206          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.880e-25
Identity = 73/178 (41.01%), Postives = 96/178 (53.93%), Query Frame = 2
Query:  203 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTG--TDVGYPGGLWFDPL 667
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG +         K  G   +  YPGG +F+PL
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPL 211          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.761e-25
Identity = 70/171 (40.94%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  206 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHKLTG--TDVGYPGGLWFDPL 667
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG +         K  G   D  YPGG  F+PL
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPL 209          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.093e-24
Identity = 67/174 (38.51%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  197 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHK-------LTGTDVGYPGGLWFDPL 667
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   TL   ++I +GW E +RW D   P   + +   P  K        TG + GYPGG +FDPL
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTG-EQGYPGGKFFDPL 201          
BLAST of EY753554 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.580e-23
Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  218 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPQHK-------LTGTDVGYPGGLWFDPL 667
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D       + D   P  K        TG + GYPGG +FDPL
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTG-EQGYPGGKFFDPL 201          
The following BLAST results are available for this feature:
BLAST of EY753554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB12_PETHY5.331e-8878.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.096e-8476.76Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.630e-4557.97Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.125e-4552.29Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU6.103e-3549.03Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL7.578e-2636.55Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_PEA2.880e-2541.01Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB13_SOLLC3.761e-2540.94Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4A_SOLLC7.093e-2438.51Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.580e-2338.92Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753554 ID=EY753554; Name=EY753554; organism=Citrus sinensis; type=EST; length=857bp
TTACACTCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGG
TAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCATCTCA
TCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTC
TTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGG
GAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCT
CTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCC
CGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGC
TGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTA
GGAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCT
CAACACTCCATCCTGGTACACAGCTGGGGAGCTAGAGTACTTCACAGACA
CCACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGC
AGACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGAT
CTTTCCCCAACACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGC
TTTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAGGTAAAGG
AGCTGAGGACTAAGGAGACAAGAATGGAANATTGCCTATGTTGGCTGGGA
TGGGTGCTNGGGTCCANCACATTTACCCCGGCCCCGGCCCATTGACATCT
CATTGCTCACCTGGCTGATCCTGGCATGCCACCGTTTTTGCTGCTCACCC
CCAGTGA
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