EY753398

Overview
NameEY753398
Unique NameEY753398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753398_ssr821 microsatellite EY753398_ssr821:821..835. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4115 contig Csv1_Contig4115:1231..2135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  486 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  486 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.543e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  487 WSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 566
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.126e-21
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  465 WSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.736e-21
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F V+W  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  465 WSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.186e-21
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 6.186e-21
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
[Close]
BLAST of EY753398 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.186e-21
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:   17 WQQDKWTRCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 256
            W QDKW   F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  492 WSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
The following BLAST results are available for this feature:
BLAST of EY753398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD2_MACFA9.543e-2260.00YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN9.543e-2260.00YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN9.543e-2260.00YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE2.126e-2158.75YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN4.736e-2157.50YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB6.186e-2158.75YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE6.186e-2158.75YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN6.186e-2158.75YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-C11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753398 ID=EY753398; Name=EY753398; organism=Citrus sinensis; type=EST; length=908bp
CAAAAACGTGTTTTACTGGCAACAAGACAAATGGACTCGCTGTTTTCCGG
TGAAGTGGCACATTGTCAAGGATGTACCAAATAGTTTGTTGAAGCACATT
ACTCTCGAGAATAATGAGAACAAGCCTGTCACTAACAGTAGGGACACTCA
AGAGATCAAGTTAGAGCAGGGACTTAAATTGATCAAAATATTCAAGGATC
ACCCAAGTAAAACGTGCATTCTGGATGATTTTGGGTTTTATGAGACTCGC
CAGAAAACCATTCAGGAAAAGAAGGCTAAACAACAGCAGTTCCAGAAACA
GGTATGGGAAGGAAAGCCTGCTGAGGAGAAGAAAGAATTGGCTAATGGGG
AACTAAAGACACAGAAGTCATCGGAGGTTGCCTCTGATTTGGTCGAAGAG
CGTACTACAACAGTTCAGAGTAATGGGGACCTAAGACTCTCTGAGAATGG
ATCAGTTGCAAAAACTGGAGATGCCCACAAGGGAAGTAAACCAGTTGTAG
TTTCAGAGAAGGTTATATTGGCAAATGGGGTTGCAAATGGTTGTTAGGCT
TAGCTGCACAGGAAGGCGGTCTGATTTTATTGGAGCTCATTGTGAGGAGT
TCTGTCAGAAGTTTTGCTGGTTTCAGACATCGTATAGAAAACTTCTGGCC
AGTTCTATGTATGACTCAGGCCGNCTTATTGGATCTGCCCTGCTGCTTTA
AAGTCAATAATTCATTGAGGGATGGGATTTTCATGTGTGANGTCAAAGAT
GGTGTGGCAGGCTAGGTTNATCAGAATCTGAGTAGTATTGCCCATCTCTT
TTATGAAGGGGGCTCTTTCTTTTTCTTTTCTTTTCCTTTNTGGNTCCTCT
CTAACAAGTTTTNATCTGCTAAGGGTTTGGGTTTATGATGCTATTTANGG
GGCTTTCT
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