EY753396

Overview
NameEY753396
Unique NameEY753396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753396_ssr45 microsatellite EY753396_ssr45:45..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY753396 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 43/138 (31.16%), Postives = 73/138 (52.90%), Query Frame = 2 
Query:  101 LMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYF------GVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSF 496
            L+L   F+L++     I   YCD   N    I ++ ++PDP + GK  T ++     + +  G  + NVA+F       +P      D+C+ +SCP++AG F  S +  +P FTP G Y  ++T+ D++N  +TC +F
Sbjct:    6 LLLLINFMLILIVNGDIW-NYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHN--DICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNRNVTCLTF 140
[Close]
BLAST of EY753396 vs. ExPASy Swiss-Prot
Match: Y8295_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 34/108 (31.48%), Postives = 56/108 (51.85%), Query Frame = 2 
Query:  194 IQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVC---EEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKI 508
            I  V + P   V G+  T + S +  + V GG V + V Y  + +  E   +C   + ++CPIAAGD+  + T+ +PS  P G YT  + + D+NN E+ C   +  +
Sbjct:   34 ITNVVLDPPTPVKGQDITISASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKYTGNVVITDQNNAEIACIDVDINL 141
The following BLAST results are available for this feature:
BLAST of EY753396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2179_DICDI4.881e-1531.16Putative phosphatidylglycerol/phosphatidylinositol... [more]
Y8295_DICDI5.585e-1131.48Putative phosphatidylglycerol/phosphatidylinositol... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-C09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753396 ID=EY753396; Name=EY753396; organism=Citrus sinensis; type=EST; length=886bp
CTTAAGGGCTCTCGTTTGCTTACTCCCGTTGCTGCAACTCTCAAGTCGTC
GTCGTCGTCGTCGTCACTTCATCATCTTCGCTGAAGCCATGGACCGTCAG
TTGATGCTGTTCGCTTGTTTTCTTCTTCTAGTTTCTTCCACTCAAGCCAT
AGGTGTCAAATACTGCGATAAGAAGAAAAACTACGCTGTAACGATTCAGC
AAGTTAAGATAATTCCTGATCCCGTAGTCACAGGCAAGCCAGCCACCTTT
AACATCTCAGCTGTTACAGGTCAAGCTGTCTATGGTGGGAAAGTGGTGAT
AAATGTTGCTTACTTTGGGGTACCTGTCCATCAAGAAACCCGTGACGTTT
GTGAGGAGGTATCGTGTCCCATTGCAGCAGGAGACTTTGTACTGTCCCAC
ACCCAGACTCTGCCTAGTTTCACTCCTCCGGGCTCCTACACACTTAAGAT
GACAATGGAGGACAAGAACAATGAAGAACTGACTTGCTTTAGCTTCAACT
TCAAAATTGGCTTTCATTCTCTGGTCTCTGATAGTTAAAAGTGCCCGGTA
CCGTATTATGATCTCTTGCGTTTCGAATGGTCAAGTTCATCCTTAACACC
AACCCAATGTAAACAAGTGTGCGCTCTATGTGGCTGCTNGTATATTATTT
AAGNTCTGNGTTCGATGGTGTTTGATGTTGTAATATTCTTGAAAGATTCG
NATCTGTAATCTGGGTTCTGGCTGGGGGTGGAATTTCTTCTCAAGGTAAA
GACGTCAATGGACTTGATTCGCGGANNNAAAAAAAANNNNAAAAAANAAA
AAAAAANANNNGGGGGGCGGCCGCTTTAAAGGATCAAGCTTCGTACCCGG
GCTTGGACGTATAACTTTTTTTAAGGGCACCTAAAT
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