EY753317

Overview
NameEY753317
Unique NameEY753317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.064e-32
Identity = 64/69 (92.75%), Postives = 69/69 (100.00%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            RFKMP+NS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQ
Sbjct:   29 RFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQ 97          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.390e-32
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            RFKMPDNS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQ
Sbjct:   29 RFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQ 97          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.423e-31
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            +FKMP  SMPKEAAYQ++NDELMLDGNPRLNLASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQ
Sbjct:   30 KFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQ 98          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.217e-28
Identity = 57/69 (82.61%), Postives = 66/69 (95.65%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            ++++ +NS+PK+AAYQ+I DELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQ
Sbjct:   28 KYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQ 96          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            ++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++
Sbjct:   29 KYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIE 97          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQ 323
            ++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++
Sbjct:   29 KYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIE 97          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  117 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTEL 320
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIEL 126          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDL 98          
BLAST of EY753317 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  123 KMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQV 326
            + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  + +
Sbjct:   31 RFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDL 98          
The following BLAST results are available for this feature:
BLAST of EY753317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DCE1_ARATH1.064e-3292.75Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_PETHY1.390e-3294.20Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC3.423e-3188.41Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE2_ARATH1.217e-2882.61Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM4.647e-1244.93Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA4.647e-1244.93Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_YEAST3.012e-1145.59Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEB_SHIFL3.934e-1145.59Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI3.934e-1145.59Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL63.934e-1145.59Glutamate decarboxylase beta OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-D06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753317 ID=EY753317; Name=EY753317; organism=Citrus sinensis; type=EST; length=839bp
CCACGCGTCCGAAAGTTGCAAACCAAAACTGAAACTTGAAAGTTATGAGA
AAAGTGAAAATTAAAAAGGACTTATTTTATTTTCAATTAGATCTTATGGG
GTGTGAATGTTGATGTAGATTCAAGATGCCAGATAATTCAATGCCAAAGG
AGGCAGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCA
AGGCTGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGA
TAAGCTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAAT
ACCCTGTAACCACAGAGCTCCAGGTATCTCTGAGTCAATGGCCCTTTGTG
TAAAGATATTGCAGCTGAATCATTTCTTGGTTTTTTTATTAAGCATTGTC
AAATAATTGGACAATGTATTATACTGATCGAACAGCATCGATTTATATCC
TGAGTATTTGGGGACGTATTCCTTTTTCTTTTTTTTTAACCATAAAGTAA
TTGTTTTAACTGATTCTGCAGAATCGGTGTGTGAATATGNATGCCCACCT
ATTTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTG
TAGGTTCATCANAAGGCATAATGCTTGCTGGCTTGGCTTTTAAAAAGAAG
GGCAGCAAAAGAAGAAAGAGCAAGGCAACCCTATGATAACCCCAATATAT
CACTGAACCTAATGTGCAGTATGCTGGGAAAAAATTGCGAGGTACTTTGA
GGTTAACTGAAAGAGGTGAACCTGGACAAGGTTTTTTGGGATGAATCCTG
GAAAGCTGGTGATTTGGAAATAAAACACCATTGGTGTGC
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